UHGV-0176929

Genome information

Genome length 36,450 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176929
vOTU ID	vOTU-046602
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576205
BioSample	SAMN07501322
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.46
Jumbo phage	No

Genome content
Genome length	36,450 bps
GC content	27.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.12%
Average CDS length	716.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176929_2	PHROG	phrog_2172	NA	unknown function
UHGV-0176929_2	UniRef90	UniRef90_UPI0005DCE5B4	replication initiation protein	NA
UHGV-0176929_2	eggNOG-mapper	1151292.QEW_0381	Initiator Replication protein	NA
UHGV-0176929_2	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0176929_2	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0176929_2	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0176929_3	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0176929_3	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0176929_3	UniRef90	UniRef90_UPI0005E82A0C	ParA family protein	NA
UHGV-0176929_3	eggNOG-mapper	1391646.AVSU01000137_gene3339	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0176929_3	Pfam	PF13614	AAA domain	AAA_31
UHGV-0176929_3	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0176929_3	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0176929_4	PHROG	phrog_27746	NA	unknown function
UHGV-0176929_4	eggNOG-mapper	1476973.JMMB01000004_gene3397	NA	NA
UHGV-0176929_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176929_6	PHROG	phrog_435	endolysin	lysis
UHGV-0176929_6	UniRef90	UniRef90_UPI0005E87828	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176929_6	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0176929_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0176929_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176929_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0176929_7	UniRef90	UniRef90_A0A0C7I1K8	Small integral membrane protein	NA
UHGV-0176929_7	eggNOG-mapper	1035196.HMPREF9998_01695	COG5546 Small integral membrane protein	NA
UHGV-0176929_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0176929_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0176929_7	COG	COG5546	NA	NA
UHGV-0176929_8	PHROG	phrog_1863	NA	unknown function
UHGV-0176929_8	eggNOG-mapper	1292035.H476_3392	NA	NA
UHGV-0176929_9	PHROG	phrog_8908	NA	unknown function
UHGV-0176929_10	PHROG	phrog_16267	NA	unknown function
UHGV-0176929_10	UniRef90	UniRef90_A0A0C7QY47	Phage minor structural protein	NA
UHGV-0176929_10	eggNOG-mapper	1391647.AVSV01000039_gene1112	Phage minor structural protein	NA
UHGV-0176929_10	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0176929_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0176929_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0176929_10	COG	COG4926	Phage-related protein	NA
UHGV-0176929_11	PHROG	phrog_1401	NA	unknown function
UHGV-0176929_11	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0176929_11	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0176929_11	Pfam	PF07761	NA	DUF1617
UHGV-0176929_11	Structural annotation	PF07761	NA	NA
UHGV-0176929_12	PHROG	phrog_2566	NA	unknown function
UHGV-0176929_12	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0176929_12	eggNOG-mapper	1499683.CCFF01000014_gene3898	NA	NA
UHGV-0176929_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0176929_13	UniRef90	UniRef90_A0A1C6GX60	Phage-related protein	NA
UHGV-0176929_13	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0176929_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0176929_13	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0176929_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0176929_14	UniRef90	UniRef90_A0A1C6GWX6	Phage-related minor tail protein	NA
UHGV-0176929_14	eggNOG-mapper	1120998.AUFC01000030_gene2245	phage tail tape measure protein	NA
UHGV-0176929_14	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0176929_14	COG	COG1511	NA	NA
UHGV-0176929_14	Structural annotation	PF20155, TIGR01760, COG5281	NA	NA
UHGV-0176929_16	PHROG	phrog_885	major tail protein	tail
UHGV-0176929_16	UniRef90	UniRef90_UPI0011DF4E5D	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0176929_16	eggNOG-mapper	931626.Awo_c30980	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0176929_16	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0176929_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176929_17	Structural annotation	PF20765	NA	NA
UHGV-0176929_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176929_18	UniRef90	UniRef90_A0A1C6DUI2	Phage protein, HK97 gp10 family	NA
UHGV-0176929_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176929_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0176929_19	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0176929_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0176929_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0176929_20	UniRef90	UniRef90_A0A1C6GX90	Phage gp6-like head-tail connector protein	NA
UHGV-0176929_20	eggNOG-mapper	1321778.HMPREF1982_03551	Phage gp6-like head-tail connector protein	NA
UHGV-0176929_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0176929_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0176929_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0176929_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0176929_21	UniRef90	UniRef90_UPI000542F91D	phage capsid protein	NA
UHGV-0176929_21	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0176929_21	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0176929_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176929_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0176929_22	UniRef90	UniRef90_A0A846JA39	NA	NA
UHGV-0176929_22	eggNOG-mapper	1321778.HMPREF1982_03549	NA	NA
UHGV-0176929_22	Pfam	PF14265	NA	DUF4355
UHGV-0176929_22	Structural annotation	PF14265	NA	NA
UHGV-0176929_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176929_23	UniRef90	UniRef90_A0A1C6GV41	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0176929_23	eggNOG-mapper	1321778.HMPREF1982_03548	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0176929_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176929_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176929_23	COG	COG2369	NA	NA
UHGV-0176929_23	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0176929_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176929_24	UniRef90	UniRef90_A0A1C6GVA0	Phage portal protein, SPP1 family	NA
UHGV-0176929_24	eggNOG-mapper	1443125.Z962_07905	portal protein, SPP1 Gp6-like	NA
UHGV-0176929_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176929_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176929_25	PHROG	phrog_11978	NA	unknown function
UHGV-0176929_25	eggNOG-mapper	1391647.AVSV01000022_gene2555	TIGRFAM Phage	NA
UHGV-0176929_25	COG	COG5362	Phage terminase large subunit	NA
UHGV-0176929_25	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0176929_26	PHROG	phrog_3218	terminase small subunit	head and packaging
UHGV-0176929_26	UniRef90	UniRef90_A0A1C6GV69	Tc3 transposase	NA
UHGV-0176929_26	eggNOG-mapper	1443122.Z958_05790	Helix-turn-helix domain of resolvase	NA
UHGV-0176929_26	Pfam	PF11427	Tc3 transposase	HTH_Tnp_Tc3_1
UHGV-0176929_26	Structural annotation	PF13384, COG3677	NA	NA
UHGV-0176929_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0176929_27	UniRef90	UniRef90_A0A1C6GVC2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0176929_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0176929_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0176929_27	Structural annotation	PF08281, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0176929_28	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0176929_28	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0176929_28	UniRef90	UniRef90_A0A1C6GV86	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-0176929_28	eggNOG-mapper	1304284.L21TH_2612	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0176929_28	Pfam	PF19263	NA	DUF5906
UHGV-0176929_28	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0176929_28	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0176929_28	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0176929_29	PHROG	phrog_5164	NA	unknown function
UHGV-0176929_29	UniRef90	UniRef90_UPI001898B3FA	nucleotide pyrophosphohydrolase	NA
UHGV-0176929_29	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0176929_30	PHROG	phrog_3565	NA	unknown function
UHGV-0176929_32	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0176929_32	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0176929_32	UniRef90	UniRef90_A0A1C6GWY9	DNA polymerase family B	NA
UHGV-0176929_32	eggNOG-mapper	1123288.SOV_6c01540	DNA polymerase elongation subunit (Family B)	NA
UHGV-0176929_32	Pfam	PF00136	DNA polymerase family B	DNA_pol_B
UHGV-0176929_32	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0176929_32	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-0176929_34	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176929_34	UniRef90	UniRef90_UPI001C389F24	NA	NA
UHGV-0176929_34	eggNOG-mapper	1123288.SOV_6c01550	NA	NA
UHGV-0176929_34	Pfam	PF05037	NA	DUF669
UHGV-0176929_34	Structural annotation	PF05037	NA	NA
UHGV-0176929_35	PHROG	phrog_8097	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176929_35	UniRef90	UniRef90_A0A1C6GWV4	Inactivated superfamily I helicase	NA
UHGV-0176929_35	eggNOG-mapper	445335.CBN_1356	AAA domain	NA
UHGV-0176929_35	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0176929_35	Pfam	PF13479	AAA domain	AAA_24
UHGV-0176929_35	COG	COG2887	RecB family exonuclease	NA
UHGV-0176929_35	Structural annotation	PF13479, PF10926, MF_00350, TIGR01618, COG2874, COG4343	NA	NA
UHGV-0176929_36	PHROG	phrog_4601	NA	unknown function
UHGV-0176929_37	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0176929_37	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0176929_37	UniRef90	UniRef90_A0A1C6GVV3	Stage V sporulation protein T	NA
UHGV-0176929_37	eggNOG-mapper	1292035.H476_1024	PFAM Transcription regulator AbrB SpoV	NA
UHGV-0176929_37	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0176929_37	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0176929_37	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0176929_37	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0176929_38	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176929_38	UniRef90	UniRef90_A0A1C6GW81	VRR-NUC domain	NA
UHGV-0176929_38	eggNOG-mapper	203119.Cthe_1738	VRR_NUC	NA
UHGV-0176929_38	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0176929_38	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0176929_40	PHROG	phrog_6244	NA	unknown function
UHGV-0176929_40	UniRef90	UniRef90_UPI0006C34CBC	siphovirus Gp157 family protein	NA
UHGV-0176929_40	eggNOG-mapper	1430331.EP10_02380	YqaJ viral recombinase family	NA
UHGV-0176929_40	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0176929_40	Structural annotation	PF05565	NA	NA
UHGV-0176929_41	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0176929_41	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0176929_41	UniRef90	UniRef90_A0A1C6GWE5	ATP-dependent helicase HepA	NA
UHGV-0176929_41	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0176929_41	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0176929_41	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0176929_41	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0176929_41	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0176929_41	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0176929_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0176929_43	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0176929_43	UniRef90	UniRef90_A0A1C6GW92	Predicted transcriptional regulator	NA
UHGV-0176929_43	eggNOG-mapper	431943.CKL_4031	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176929_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0176929_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176929_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176929_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0176929_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176929_45	UniRef90	UniRef90_A0A1C6GW61	Transcriptional repressor DicA	NA
UHGV-0176929_45	eggNOG-mapper	340099.Teth39_2244	transcriptional regulator, XRE family	NA
UHGV-0176929_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176929_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0176929_45	Structural annotation	PF12844, NF041951, COG1476	NA	NA