UHGV-0176937

Genome information

Genome length 40,976 bps

CDS count 70

Completeness 89.08% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176937
vOTU ID	vOTU-028932
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587488
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.63
Jumbo phage	No

Genome content
Genome length	40,976 bps
GC content	54.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.27%
Average CDS length	532.41 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176937_1	Structural annotation	PF11417	NA	NA
UHGV-0176937_2	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176937_2	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0176937_2	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0176937_2	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0176937_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0176937_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176937_5	UniRef90	UniRef90_A0A3R6M557	PAPS_reduct domain-containing protein	NA
UHGV-0176937_5	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0176937_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0176937_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176937_5	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0176937_6	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0176937_6	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0176937_7	PHROG	phrog_38832	NA	unknown function
UHGV-0176937_9	PHROG	phrog_22543	NA	unknown function
UHGV-0176937_10	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0176937_10	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0176937_15	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0176937_15	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0176937_15	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0176937_15	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0176937_15	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0176937_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0176937_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0176937_15	COG	COG0863	DNA modification methylase	NA
UHGV-0176937_15	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0176937_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176937_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0176937_17	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-0176937_17	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0176937_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176937_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176937_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176937_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176937_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176937_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176937_18	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0176937_18	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0176937_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176937_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0176937_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176937_19	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0176937_19	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0176937_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0176937_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0176937_19	COG	COG2369	NA	NA
UHGV-0176937_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176937_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176937_20	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0176937_20	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0176937_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0176937_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0176937_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0176937_21	Structural annotation	PF18152	NA	NA
UHGV-0176937_22	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0176937_22	Structural annotation	PF06810	NA	NA
UHGV-0176937_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0176937_23	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0176937_23	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0176937_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0176937_23	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0176937_25	PHROG	phrog_17977	NA	unknown function
UHGV-0176937_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0176937_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0176937_26	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0176937_26	Structural annotation	PF11367	NA	NA
UHGV-0176937_27	PHROG	phrog_885	major tail protein	tail
UHGV-0176937_27	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0176937_27	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0176937_27	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0176937_29	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0176937_29	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0176937_29	COG	COG1511	NA	NA
UHGV-0176937_29	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0176937_30	PHROG	phrog_1194	NA	unknown function
UHGV-0176937_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0176937_31	PHROG	phrog_32744	NA	unknown function
UHGV-0176937_31	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0176937_32	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0176937_32	UniRef90	UniRef90_A0A8D9PDI4	Collagen I alpha 1	NA
UHGV-0176937_32	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0176937_32	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0176937_33	PHROG	phrog_2295	NA	unknown function
UHGV-0176937_33	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0176937_33	Structural annotation	PF21722	NA	NA
UHGV-0176937_34	eggNOG-mapper	1291050.JAGE01000001_gene436	NA	NA
UHGV-0176937_35	PHROG	phrog_18593	NA	unknown function
UHGV-0176937_35	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0176937_35	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0176937_35	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0176937_35	Structural annotation	PF14600	NA	NA
UHGV-0176937_36	PHROG	phrog_1863	NA	unknown function
UHGV-0176937_36	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0176937_36	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0176937_37	PHROG	phrog_443	holin	lysis
UHGV-0176937_37	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0176937_37	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0176937_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0176937_37	Structural annotation	PF16945	NA	NA
UHGV-0176937_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0176937_38	PHROG	phrog_6745	endolysin	lysis
UHGV-0176937_38	UniRef90	UniRef90_A0A1Q9JKB4	Endolysin	NA
UHGV-0176937_38	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0176937_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0176937_38	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176937_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0176937_38	COG	COG1388	LysM repeat	NA
UHGV-0176937_38	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0176937_39	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0176937_41	PHROG	phrog_3754	NA	unknown function
UHGV-0176937_41	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0176937_42	PHROG	phrog_21718	NA	unknown function
UHGV-0176937_42	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176937_43	PHROG	phrog_22984	NA	unknown function
UHGV-0176937_44	PHROG	phrog_16490	NA	unknown function
UHGV-0176937_44	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0176937_45	PHROG	phrog_20016	NA	unknown function
UHGV-0176937_45	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176937_45	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0176937_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176937_46	Structural annotation	PF12510	NA	NA
UHGV-0176937_47	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0176937_48	KOfam	K14059	int; integrase	NA
UHGV-0176937_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0176937_48	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0176937_48	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0176937_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176937_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176937_48	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0176937_49	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0176937_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176937_49	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0176937_52	PHROG	phrog_585	NA	unknown function
UHGV-0176937_52	UniRef90	UniRef90_UPI0008A69A23	NA	NA
UHGV-0176937_52	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-0176937_52	Pfam	PF10711	NA	DUF2513
UHGV-0176937_52	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0176937_53	UniRef90	UniRef90_A0A645BBY0	HTH cro/C1-type domain-containing protein	NA
UHGV-0176937_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176937_53	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0176937_54	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0176937_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176937_54	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0176937_56	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0176937_58	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0176937_58	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0176937_60	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0176937_60	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0176937_60	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0176937_61	PHROG	phrog_1029	NA	unknown function
UHGV-0176937_61	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0176937_61	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0176937_63	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0176937_63	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0176937_63	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0176937_64	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0176937_64	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0176937_65	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0176937_65	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0176937_65	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0176937_65	Pfam	PF05772	NinB protein	NinB
UHGV-0176937_65	Structural annotation	PF05772	NA	NA
UHGV-0176937_66	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176937_67	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176937_67	UniRef90	UniRef90_A0A1I0TSJ1	Helix-turn-helix domain of resolvase	NA
UHGV-0176937_67	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0176937_67	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0176937_67	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0176937_67	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0176937_67	Structural annotation	PF07463, PF13392	NA	NA
UHGV-0176937_68	PHROG	phrog_4973	NA	unknown function
UHGV-0176937_68	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0176937_68	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0176937_68	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0176937_68	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0176937_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0176937_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0176937_69	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0176937_69	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0176937_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0176937_69	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0176937_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0176937_69	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0176937_69	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA