UHGV-0176940

Genome information

Genome length 34,421 bps

CDS count 57

Completeness 93.47% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176940
vOTU ID	vOTU-010972
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587491
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.26
Jumbo phage	No

Genome content
Genome length	34,421 bps
GC content	58.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.76%
Average CDS length	557.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176940_1	PHROG	phrog_1066	NA	unknown function
UHGV-0176940_1	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0176940_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0176940_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0176940_2	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0176940_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0176940_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0176940_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0176940_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0176940_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0176940_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0176940_3	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0176940_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0176940_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0176940_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0176940_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0176940_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0176940_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0176940_4	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0176940_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0176940_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0176940_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0176940_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0176940_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0176940_5	UniRef90	UniRef90_A0A355RXP5	Phage major capsid protein	NA
UHGV-0176940_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0176940_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0176940_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0176940_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0176940_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0176940_6	PHROG	phrog_5223	neck protein	connector
UHGV-0176940_6	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0176940_6	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0176940_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0176940_7	UniRef90	UniRef90_UPI00057C10DD	phage head closure protein	NA
UHGV-0176940_7	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0176940_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0176940_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0176940_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0176940_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0176940_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0176940_8	Structural annotation	PF05657	NA	NA
UHGV-0176940_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176940_9	Structural annotation	TIGR01725	NA	NA
UHGV-0176940_10	PHROG	phrog_88	major tail protein	tail
UHGV-0176940_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0176940_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0176940_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0176940_10	COG	COG5492	NA	NA
UHGV-0176940_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0176940_11	Structural annotation	PF11836	NA	NA
UHGV-0176940_12	PHROG	phrog_33680	NA	unknown function
UHGV-0176940_12	UniRef90	UniRef90_A0A2Z4I560	Phage tail protein	NA
UHGV-0176940_12	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0176940_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0176940_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0176940_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0176940_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0176940_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0176940_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0176940_14	PHROG	phrog_26795	NA	unknown function
UHGV-0176940_14	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0176940_14	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0176940_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0176940_15	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0176940_16	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0176940_16	PHROG	phrog_32779	NA	unknown function
UHGV-0176940_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176940_17	PHROG	phrog_30034	NA	unknown function
UHGV-0176940_17	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0176940_17	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0176940_20	PHROG	phrog_918	NA	unknown function
UHGV-0176940_20	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0176940_20	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0176940_20	Pfam	PF19791	NA	DUF6275
UHGV-0176940_20	Structural annotation	PF19791	NA	NA
UHGV-0176940_21	PHROG	phrog_13256	NA	unknown function
UHGV-0176940_21	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0176940_22	PHROG	phrog_14030	NA	unknown function
UHGV-0176940_22	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0176940_22	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0176940_22	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0176940_23	Structural annotation	PF13412, MF_00674, COG1342	NA	NA
UHGV-0176940_24	eggNOG-mapper	760568.Desku_0885	NA	NA
UHGV-0176940_24	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-0176940_26	PHROG	phrog_25567	NA	unknown function
UHGV-0176940_26	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0176940_26	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0176940_26	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0176940_30	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0176940_30	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0176940_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0176940_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0176940_31	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0176940_31	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0176940_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0176940_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0176940_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0176940_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0176940_31	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0176940_32	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0176940_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176940_32	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0176940_32	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0176940_33	PHROG	phrog_10292	NA	unknown function
UHGV-0176940_33	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-0176940_33	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0176940_33	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0176940_33	Pfam	PF05154	TM2 domain	TM2
UHGV-0176940_33	COG	COG2314	NA	NA
UHGV-0176940_34	eggNOG-mapper	622312.ROSEINA2194_02761	NOG18738 non supervised orthologous group	NA
UHGV-0176940_34	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0176940_34	Structural annotation	PF02805	NA	NA
UHGV-0176940_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176940_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0176940_36	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0176940_36	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0176940_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0176940_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0176940_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176940_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0176940_39	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0176940_39	Structural annotation	PF12286	NA	NA
UHGV-0176940_40	Structural annotation	PF10548	NA	NA
UHGV-0176940_43	Structural annotation	PF05082	NA	NA
UHGV-0176940_46	PHROG	phrog_36399	NA	unknown function
UHGV-0176940_47	PHROG	phrog_8470	NA	unknown function
UHGV-0176940_47	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0176940_47	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0176940_47	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0176940_47	Structural annotation	PF14284	NA	NA
UHGV-0176940_48	PHROG	phrog_15609	NA	unknown function
UHGV-0176940_48	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0176940_48	Pfam	PF11300	NA	DUF3102
UHGV-0176940_48	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0176940_48	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0176940_49	PHROG	phrog_38832	NA	unknown function
UHGV-0176940_49	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0176940_49	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0176940_52	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0176940_52	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0176940_52	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0176940_52	Pfam	PF06356	NA	DUF1064
UHGV-0176940_52	Structural annotation	PF06356	NA	NA