UHGV-0176971

Genome information

Genome length 26,714 bps

CDS count 44

Completeness 63.23% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176971
vOTU ID	vOTU-028935
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587935
BioSample	SAMN09781777
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.24
Jumbo phage	No

Genome content
Genome length	26,714 bps
GC content	53.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.84%
Average CDS length	555.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176971_2	PHROG	phrog_3136	NA	unknown function
UHGV-0176971_2	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0176971_2	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0176971_3	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0176971_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176971_3	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0176971_6	PHROG	phrog_872	NA	unknown function
UHGV-0176971_6	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0176971_6	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0176971_6	Pfam	PF11195	NA	DUF2829
UHGV-0176971_6	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0176971_6	Structural annotation	PF11195	NA	NA
UHGV-0176971_8	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0176971_8	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0176971_8	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0176971_9	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0176971_9	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0176971_9	Structural annotation	PF04218, COG3677	NA	NA
UHGV-0176971_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0176971_10	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0176971_10	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0176971_10	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0176971_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0176971_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0176971_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0176971_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0176971_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0176971_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0176971_11	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0176971_11	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0176971_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176971_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0176971_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0176971_12	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0176971_12	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0176971_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0176971_12	COG	COG2369	NA	NA
UHGV-0176971_12	Structural annotation	PF06152	NA	NA
UHGV-0176971_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0176971_14	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0176971_14	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0176971_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0176971_14	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0176971_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0176971_15	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0176971_15	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0176971_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0176971_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0176971_16	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0176971_17	PHROG	phrog_3366	NA	unknown function
UHGV-0176971_17	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0176971_17	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0176971_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0176971_18	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0176971_18	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0176971_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0176971_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0176971_19	PHROG	phrog_3266	tail completion	connector
UHGV-0176971_19	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0176971_19	Structural annotation	PF12691	NA	NA
UHGV-0176971_20	PHROG	phrog_3099	NA	unknown function
UHGV-0176971_20	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0176971_20	Structural annotation	TIGR02126	NA	NA
UHGV-0176971_21	PHROG	phrog_11299	NA	unknown function
UHGV-0176971_21	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0176971_21	Structural annotation	PF10666	NA	NA
UHGV-0176971_22	PHROG	phrog_706	NA	unknown function
UHGV-0176971_22	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0176971_22	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0176971_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0176971_22	Structural annotation	PF06854	NA	NA
UHGV-0176971_23	PHROG	phrog_806	NA	unknown function
UHGV-0176971_23	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0176971_23	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0176971_23	Pfam	PF11611	NA	DUF4352
UHGV-0176971_23	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0176971_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176971_24	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0176971_24	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0176971_24	COG	COG1511	NA	NA
UHGV-0176971_24	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0176971_25	PHROG	phrog_1194	NA	unknown function
UHGV-0176971_25	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0176971_25	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0176971_26	PHROG	phrog_32308	NA	unknown function
UHGV-0176971_26	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0176971_26	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0176971_26	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0176971_27	UniRef90	UniRef90_R9LW25	Peptidase S74 domain-containing protein	NA
UHGV-0176971_27	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0176971_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0176971_27	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0176971_29	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0176971_29	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0176971_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0176971_29	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0176971_33	PHROG	phrog_27545	NA	unknown function
UHGV-0176971_33	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0176971_33	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0176971_33	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0176971_33	Structural annotation	PF16170	NA	NA
UHGV-0176971_34	PHROG	phrog_937	hemolysin	other
UHGV-0176971_34	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0176971_36	PHROG	phrog_13256	NA	unknown function
UHGV-0176971_36	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0176971_37	PHROG	phrog_21825	endolysin	lysis
UHGV-0176971_37	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0176971_37	eggNOG-mapper	1007096.BAGW01000022_gene2648	CHAP domain	NA
UHGV-0176971_37	Pfam	PF05257	CHAP domain	CHAP
UHGV-0176971_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0176971_37	Structural annotation	TIGR02594	NA	NA
UHGV-0176971_38	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0176971_38	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0176971_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176971_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176971_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0176971_41	PHROG	phrog_3754	NA	unknown function
UHGV-0176971_41	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0176971_42	PHROG	phrog_21718	NA	unknown function
UHGV-0176971_42	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0176971_43	PHROG	phrog_22984	NA	unknown function
UHGV-0176971_44	PHROG	phrog_16490	NA	unknown function
UHGV-0176971_44	eggNOG-mapper	397290.C810_05212	NA	NA