UHGV-0176996

Genome information

Genome length 51,106 bps

CDS count 94

Completeness 98.07% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0176996
vOTU ID	vOTU-010789
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_563834
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length	51,106 bps
GC content	49.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	88.38%
Average CDS length	484.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0176996_1	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0176996_2	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-0176996_2	Pfam	PF16478	NA	DUF5055
UHGV-0176996_2	Structural annotation	PF16478	NA	NA
UHGV-0176996_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0176996_5	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0176996_5	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0176996_5	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0176996_6	PHROG	phrog_1194	NA	unknown function
UHGV-0176996_6	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0176996_6	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0176996_7	PHROG	phrog_32744	NA	unknown function
UHGV-0176996_7	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0176996_7	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0176996_8	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0176996_8	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0176996_8	Structural annotation	PF18459	NA	NA
UHGV-0176996_9	PHROG	phrog_22773	NA	unknown function
UHGV-0176996_9	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0176996_10	PHROG	phrog_2310	NA	unknown function
UHGV-0176996_11	PHROG	phrog_937	hemolysin	other
UHGV-0176996_11	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0176996_13	PHROG	phrog_1129	holin	lysis
UHGV-0176996_13	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0176996_13	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0176996_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0176996_13	Structural annotation	PF06946	NA	NA
UHGV-0176996_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0176996_14	PHROG	phrog_670	endolysin	lysis
UHGV-0176996_14	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0176996_14	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0176996_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0176996_14	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0176996_14	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0176996_15	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0176996_15	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0176996_16	PHROG	phrog_3754	NA	unknown function
UHGV-0176996_16	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0176996_17	PHROG	phrog_21718	NA	unknown function
UHGV-0176996_17	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0176996_17	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0176996_18	PHROG	phrog_22984	NA	unknown function
UHGV-0176996_19	PHROG	phrog_16490	NA	unknown function
UHGV-0176996_19	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0176996_20	PHROG	phrog_20016	NA	unknown function
UHGV-0176996_20	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0176996_20	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0176996_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0176996_21	Structural annotation	PF12510	NA	NA
UHGV-0176996_22	UniRef90	UniRef90_A0A7M1RRU0	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0176996_22	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0176996_23	KOfam	K14059	int; integrase	NA
UHGV-0176996_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0176996_23	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0176996_23	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0176996_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0176996_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0176996_23	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0176996_24	PHROG	phrog_10292	NA	unknown function
UHGV-0176996_24	UniRef90	UniRef90_A0A3D4EH33	TM2 domain-containing protein	NA
UHGV-0176996_24	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0176996_24	Pfam	PF05154	TM2 domain	TM2
UHGV-0176996_24	COG	COG2314	NA	NA
UHGV-0176996_24	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0176996_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176996_27	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0176996_27	eggNOG-mapper	1280676.AUJO01000001_gene2390	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0176996_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176996_27	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0176996_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0176996_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0176996_28	UniRef90	UniRef90_UPI0009FAA490	helix-turn-helix domain-containing protein	NA
UHGV-0176996_28	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-0176996_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0176996_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176996_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0176996_30	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0176996_31	PHROG	phrog_9562	NA	unknown function
UHGV-0176996_31	UniRef90	UniRef90_A0A1C5W9L2	Type III effector pipB2	NA
UHGV-0176996_31	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0176996_31	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0176996_31	Pfam	PF19062	NA	DUF5758
UHGV-0176996_31	COG	COG1357	NA	NA
UHGV-0176996_31	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0176996_32	PHROG	phrog_25245	NA	unknown function
UHGV-0176996_32	UniRef90	UniRef90_A0A1C5W8M4	Cell wall-binding protein yocH	NA
UHGV-0176996_32	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0176996_32	Pfam	PF06725	3D domain	3D
UHGV-0176996_32	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0176996_32	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0176996_34	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0176996_34	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0176996_34	eggNOG-mapper	903814.ELI_1273	AAA domain	NA
UHGV-0176996_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-0176996_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0176996_36	PHROG	phrog_18107	NA	unknown function
UHGV-0176996_36	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0176996_36	Structural annotation	PF05037	NA	NA
UHGV-0176996_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0176996_37	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0176996_37	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0176996_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0176996_37	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0176996_37	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0176996_39	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0176996_39	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0176996_39	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0176996_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0176996_40	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0176996_40	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0176996_40	UniRef90	UniRef90_A0A1C5W9J7	DNA repair protein RadA	NA
UHGV-0176996_40	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0176996_40	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0176996_40	Pfam	PF13481	AAA domain	AAA_25
UHGV-0176996_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0176996_40	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0176996_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0176996_42	UniRef90	UniRef90_A0A4D7B2Q5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0176996_42	eggNOG-mapper	411467.BACCAP_03937	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	NA
UHGV-0176996_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0176996_42	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0176996_43	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0176996_43	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0176996_43	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0176996_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176996_43	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0176996_44	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0176996_45	PHROG	phrog_10714	NA	unknown function
UHGV-0176996_45	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0176996_45	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0176996_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0176996_47	PHROG	phrog_25732	NA	unknown function
UHGV-0176996_49	PHROG	phrog_37865	NA	unknown function
UHGV-0176996_51	PHROG	phrog_38832	NA	unknown function
UHGV-0176996_51	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0176996_53	PHROG	phrog_22543	NA	unknown function
UHGV-0176996_55	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176996_55	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0176996_55	Structural annotation	PF17375	NA	NA
UHGV-0176996_56	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0176996_56	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0176996_56	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0176996_57	PHROG	phrog_474	phosphofructokinase	other
UHGV-0176996_57	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0176996_57	Pfam	PF19905	NA	DUF6378
UHGV-0176996_59	PHROG	phrog_924	NA	unknown function
UHGV-0176996_59	UniRef90	UniRef90_A0A6I7G0Z3	NA	NA
UHGV-0176996_59	Pfam	PF04448	NA	DUF551
UHGV-0176996_59	Structural annotation	NF041588	NA	NA
UHGV-0176996_60	PHROG	phrog_8684	NA	unknown function
UHGV-0176996_60	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-0176996_60	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0176996_60	Pfam	PF09643	YopX protein	YopX
UHGV-0176996_60	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0176996_60	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0176996_61	UniRef90	UniRef90_A0A1C5WAG7	Restriction alleviation protein, Lar family	NA
UHGV-0176996_61	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0176996_61	Structural annotation	PF14354	NA	NA
UHGV-0176996_63	PHROG	phrog_25385	NA	unknown function
UHGV-0176996_63	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0176996_66	UniRef90	UniRef90_A0A0F0C267	HTH cro/C1-type domain-containing protein	NA
UHGV-0176996_66	Structural annotation	PF16677	NA	NA
UHGV-0176996_67	UniRef90	UniRef90_UPI001959AABF	Lar family restriction alleviation protein	NA
UHGV-0176996_70	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0176996_70	Structural annotation	PF18267	NA	NA
UHGV-0176996_74	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0176996_75	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176996_75	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0176996_75	Structural annotation	PF10013, COG4338	NA	NA
UHGV-0176996_76	UniRef90	UniRef90_A0A810QB23	NA	NA
UHGV-0176996_76	Pfam	PF04448	NA	DUF551
UHGV-0176996_76	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0176996_77	UniRef90	UniRef90_A0A3D5L5C3	Cytochrome C	NA
UHGV-0176996_77	eggNOG-mapper	1200567.JNKD01000039_gene220	NA	NA
UHGV-0176996_78	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0176996_78	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0176996_78	UniRef90	UniRef90_A0A3B8S253	RNA-splicing ligase RtcB (Fragment)	NA
UHGV-0176996_78	eggNOG-mapper	1232443.BAIA02000103_gene2968	tRNA-splicing ligase RtcB	NA
UHGV-0176996_78	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0176996_78	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0176996_79	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0176996_79	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0176996_79	UniRef90	UniRef90_A0A1C5WBR5	RNA-splicing ligase RtcB	NA
UHGV-0176996_79	eggNOG-mapper	445972.ANACOL_01398	NA	NA
UHGV-0176996_79	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0176996_79	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0176996_79	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0176996_81	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0176996_81	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0176996_81	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0176996_81	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0176996_81	COG	COG5410	NA	NA
UHGV-0176996_81	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0176996_82	Structural annotation	COG4416	NA	NA
UHGV-0176996_83	PHROG	phrog_64	portal protein	head and packaging
UHGV-0176996_83	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0176996_83	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0176996_83	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0176996_83	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0176996_84	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0176996_84	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0176996_84	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0176996_86	PHROG	phrog_909	major head protein	head and packaging
UHGV-0176996_87	PHROG	phrog_29	major head protein	head and packaging
UHGV-0176996_87	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0176996_87	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0176996_87	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0176996_87	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0176996_88	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0176996_90	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-0176996_90	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0176996_90	Structural annotation	TIGR01560	NA	NA
UHGV-0176996_91	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0176996_91	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0176996_91	Structural annotation	PF17375	NA	NA
UHGV-0176996_92	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0176996_92	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0176996_92	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0176996_92	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0176996_93	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0176996_94	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA