UHGV-0177004

Genome information

Genome length 37,364 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177004
vOTU ID	vOTU-010952
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589732
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.4
Jumbo phage	No

Genome content
Genome length	37,364 bps
GC content	55.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.31%
Average CDS length	526.31 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177004_1	Structural annotation	PF19962	NA	NA
UHGV-0177004_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177004_2	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0177004_2	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0177004_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177004_2	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0177004_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-0177004_3	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0177004_3	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177004_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177004_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177004_4	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0177004_4	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0177004_4	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0177004_4	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0177004_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177004_5	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0177004_5	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0177004_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177004_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177004_6	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0177004_6	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0177004_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177004_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177004_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177004_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177004_7	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0177004_7	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0177004_7	Structural annotation	PF09355	NA	NA
UHGV-0177004_8	PHROG	phrog_501	head closure Hc1	connector
UHGV-0177004_8	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0177004_8	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0177004_9	PHROG	phrog_387	neck protein	connector
UHGV-0177004_9	UniRef90	UniRef90_A0A139NAV7	Phage-associated protein	NA
UHGV-0177004_9	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0177004_10	PHROG	phrog_123	tail terminator	connector
UHGV-0177004_10	UniRef90	UniRef90_R6D1D5	NA	NA
UHGV-0177004_10	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0177004_10	Structural annotation	PF06141	NA	NA
UHGV-0177004_11	PHROG	phrog_117	major tail protein	tail
UHGV-0177004_11	UniRef90	UniRef90_A0A356C4M0	Phage tail protein	NA
UHGV-0177004_11	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0177004_11	COG	COG5492	NA	NA
UHGV-0177004_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0177004_12	PHROG	phrog_1526	NA	unknown function
UHGV-0177004_12	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0177004_13	PHROG	phrog_1633	NA	unknown function
UHGV-0177004_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0177004_14	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0177004_14	COG	COG1511	NA	NA
UHGV-0177004_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0177004_15	PHROG	phrog_3558	tail protein	tail
UHGV-0177004_15	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0177004_15	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0177004_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177004_15	COG	COG4926	Phage-related protein	NA
UHGV-0177004_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177004_17	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0177004_17	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0177004_19	PHROG	phrog_19280	NA	unknown function
UHGV-0177004_19	UniRef90	UniRef90_A0A844DHL3	NA	NA
UHGV-0177004_19	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0177004_19	Pfam	PF19789	NA	DUF6273
UHGV-0177004_19	Structural annotation	PF19789	NA	NA
UHGV-0177004_20	eggNOG-mapper	1226322.HMPREF1545_03569	NA	NA
UHGV-0177004_20	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0177004_22	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0177004_22	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0177004_22	UniRef90	UniRef90_A0A844D6B7	Reverse transcriptase domain-containing protein	NA
UHGV-0177004_22	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0177004_22	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0177004_22	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0177004_22	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0177004_22	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0177004_24	UniRef90	UniRef90_A0A844DDG4	XkdX family protein	NA
UHGV-0177004_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0177004_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0177004_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0177004_26	PHROG	phrog_291	endolysin	lysis
UHGV-0177004_26	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0177004_26	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0177004_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177004_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0177004_26	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0177004_28	PHROG	phrog_15303	NA	unknown function
UHGV-0177004_31	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0177004_31	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0177004_35	PHROG	phrog_16490	NA	unknown function
UHGV-0177004_35	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0177004_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177004_37	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0177004_38	KOfam	K14059	int; integrase	NA
UHGV-0177004_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0177004_38	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0177004_38	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0177004_38	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0177004_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177004_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177004_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177004_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0177004_39	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0177004_39	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0177004_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177004_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0177004_39	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177004_44	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0177004_44	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0177004_44	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0177004_52	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0177004_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177004_53	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0177004_53	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177004_56	PHROG	phrog_7566	NA	unknown function
UHGV-0177004_56	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0177004_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177004_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177004_57	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0177004_57	eggNOG-mapper	411483.FAEPRAA2165_01975	Single-stranded DNA-binding protein	NA
UHGV-0177004_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177004_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177004_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177004_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177004_57	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0177004_58	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0177004_58	Pfam	PF19481	NA	DUF6017
UHGV-0177004_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177004_58	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0177004_60	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0177004_60	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177004_60	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0177004_60	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0177004_60	Pfam	PF13614	AAA domain	AAA_31
UHGV-0177004_60	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0177004_60	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0177004_61	Pfam	PF04448	NA	DUF551
UHGV-0177004_61	Structural annotation	PF04448	NA	NA
UHGV-0177004_62	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177004_62	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177004_62	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0177004_62	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0177004_62	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177004_62	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177004_62	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0177004_63	Structural annotation	PF04545	NA	NA