UHGV-0177053

Genome information

Genome length 25,962 bps

CDS count 43

Completeness 60.95% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177053
vOTU ID	vOTU-022535
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583763
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	25,962 bps
GC content	52.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	97.02%
Average CDS length	590.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177053_1	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0177053_1	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-0177053_1	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0177053_1	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0177053_1	Structural annotation	PF18909	NA	NA
UHGV-0177053_2	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0177053_2	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0177053_2	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0177053_2	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0177053_2	Pfam	PF00692	dUTPase	dUTPase
UHGV-0177053_2	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0177053_2	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0177053_2	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0177053_4	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0177053_4	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0177053_5	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0177053_5	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0177053_5	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0177053_5	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0177053_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177053_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177053_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0177053_5	COG	COG0863	DNA modification methylase	NA
UHGV-0177053_5	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0177053_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177053_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0177053_7	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0177053_7	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0177053_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177053_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0177053_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177053_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177053_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177053_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177053_8	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0177053_8	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0177053_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177053_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177053_10	PHROG	phrog_8680	NA	unknown function
UHGV-0177053_10	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0177053_10	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0177053_10	Pfam	PF14386	NA	DUF4417
UHGV-0177053_10	Structural annotation	PF14386	NA	NA
UHGV-0177053_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177053_11	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0177053_11	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0177053_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177053_11	COG	COG2369	NA	NA
UHGV-0177053_11	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0177053_13	PHROG	phrog_29211	NA	unknown function
UHGV-0177053_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0177053_14	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0177053_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177053_15	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0177053_15	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0177053_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177053_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177053_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177053_15	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177053_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177053_16	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0177053_17	PHROG	phrog_3366	NA	unknown function
UHGV-0177053_17	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0177053_17	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0177053_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177053_18	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0177053_18	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0177053_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177053_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0177053_19	PHROG	phrog_3266	tail completion	connector
UHGV-0177053_19	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0177053_19	Structural annotation	PF12691	NA	NA
UHGV-0177053_20	PHROG	phrog_3099	NA	unknown function
UHGV-0177053_20	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0177053_20	Structural annotation	TIGR02126	NA	NA
UHGV-0177053_21	PHROG	phrog_11299	NA	unknown function
UHGV-0177053_21	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0177053_21	Structural annotation	PF10666	NA	NA
UHGV-0177053_22	PHROG	phrog_706	NA	unknown function
UHGV-0177053_22	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0177053_22	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0177053_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177053_22	Structural annotation	PF06854	NA	NA
UHGV-0177053_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177053_23	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0177053_23	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0177053_23	COG	COG1511	NA	NA
UHGV-0177053_24	PHROG	phrog_1194	NA	unknown function
UHGV-0177053_24	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0177053_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177053_25	PHROG	phrog_13879	NA	unknown function
UHGV-0177053_25	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0177053_25	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0177053_26	PHROG	phrog_18725	NA	unknown function
UHGV-0177053_26	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0177053_27	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0177053_28	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0177053_29	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0177053_30	PHROG	phrog_13589	NA	unknown function
UHGV-0177053_30	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0177053_31	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0177053_34	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0177053_35	PHROG	phrog_937	hemolysin	other
UHGV-0177053_37	PHROG	phrog_13256	NA	unknown function
UHGV-0177053_37	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0177053_38	PHROG	phrog_14030	NA	unknown function
UHGV-0177053_38	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-0177053_38	eggNOG-mapper	1095750.HMPREF9970_0318	Putative cell wall binding repeat	NA
UHGV-0177053_38	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0177053_39	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0177053_42	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0177053_42	Structural annotation	PF10723	NA	NA
UHGV-0177053_43	PHROG	phrog_3754	NA	unknown function
UHGV-0177053_43	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA