UHGV-0177214

Genome information

Genome length 33,688 bps

CDS count 46

Completeness 86.78% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177214
vOTU ID	vOTU-028956
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581113
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.14
Jumbo phage	No

Genome content
Genome length	33,688 bps
GC content	52.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.15%
Average CDS length	693.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177214_1	PHROG	phrog_4433	NA	unknown function
UHGV-0177214_1	UniRef90	UniRef90_A0A3S4IYA1	Gp53	NA
UHGV-0177214_1	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0177214_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0177214_4	Structural annotation	NF041588	NA	NA
UHGV-0177214_7	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0177214_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0177214_9	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0177214_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177214_9	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0177214_9	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0177214_10	UniRef90	UniRef90_A0A8D9PDX9	Histone H3.3 finger-like protein	NA
UHGV-0177214_11	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0177214_11	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0177214_11	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0177214_13	KOfam	K14059	int; integrase	NA
UHGV-0177214_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0177214_13	UniRef90	UniRef90_A0A8D9PE11	Integrase	NA
UHGV-0177214_13	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0177214_13	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0177214_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177214_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177214_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177214_14	UniRef90	UniRef90_A0A8D9UHE1	PolyVal ADP-ribosyltransferase	NA
UHGV-0177214_14	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0177214_14	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0177214_14	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0177214_14	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0177214_15	Structural annotation	MF_01304	NA	NA
UHGV-0177214_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177214_16	PHROG	phrog_435	endolysin	lysis
UHGV-0177214_16	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0177214_16	eggNOG-mapper	1519439.JPJG01000014_gene134	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177214_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177214_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177214_16	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0177214_17	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0177214_18	PHROG	phrog_1863	NA	unknown function
UHGV-0177214_18	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0177214_19	KOfam	K06871	NA	NA
UHGV-0177214_19	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0177214_19	UniRef90	UniRef90_A0A174B214	Anaerobic sulfatase-maturase	NA
UHGV-0177214_19	eggNOG-mapper	457412.RSAG_01114	4Fe-4S single cluster domain	NA
UHGV-0177214_19	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0177214_19	NCBIFam	TIGR04115.1	radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-0177214_19	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-0177214_19	Structural annotation	PF00962, MF_00660, TIGR04115, COG0641	NA	NA
UHGV-0177214_20	Structural annotation	PF13801, TIGR04116, COG5420	NA	NA
UHGV-0177214_23	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0177214_23	PHROG	phrog_819	tail protein	tail
UHGV-0177214_23	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-0177214_23	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177214_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0177214_24	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0177214_24	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0177214_24	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0177214_26	PHROG	phrog_15239	NA	unknown function
UHGV-0177214_27	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0177214_27	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0177214_27	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0177214_27	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0177214_27	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177214_28	UniRef90	UniRef90_A0A8D9UHB9	Non-structural protein 5	NA
UHGV-0177214_29	UniRef90	UniRef90_A0A8D9UHD6	Ogr/Delta-like zinc finger	NA
UHGV-0177214_29	Structural annotation	PF20020	NA	NA
UHGV-0177214_30	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177214_30	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0177214_30	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0177214_30	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0177214_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177214_32	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0177214_32	UniRef90	UniRef90_A0A8D9UH35	Large subunit terminase	NA
UHGV-0177214_32	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0177214_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177214_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177214_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177214_33	UniRef90	UniRef90_A0A8D9UHF6	NA	NA
UHGV-0177214_33	eggNOG-mapper	1054213.HMPREF9946_03131	NA	NA
UHGV-0177214_33	Pfam	PF18932	NA	DUF5681
UHGV-0177214_34	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177214_34	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0177214_34	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0177214_34	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0177214_34	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0177214_34	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0177214_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177214_35	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0177214_35	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0177214_35	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0177214_42	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177214_42	Structural annotation	TIGR04381	NA	NA
UHGV-0177214_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177214_44	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177214_44	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177214_44	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0177214_44	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0177214_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177214_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177214_45	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0177214_45	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177214_45	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0177214_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177214_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177214_45	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA