UHGV-0177226

Genome information

Genome length 42,495 bps

CDS count 71

Completeness 95.43% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177226
vOTU ID	vOTU-071626
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_567260
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.3
Jumbo phage	No

Genome content
Genome length	42,495 bps
GC content	36.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.23%
Average CDS length	550.01 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177226_1	PHROG	phrog_962	holin	lysis
UHGV-0177226_1	UniRef90	UniRef90_A0A173TVM5	Small integral membrane protein	NA
UHGV-0177226_1	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0177226_1	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0177226_1	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0177226_1	COG	COG5546	NA	NA
UHGV-0177226_2	Structural annotation	PF08931	NA	NA
UHGV-0177226_5	PHROG	phrog_18444	NA	unknown function
UHGV-0177226_6	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0177226_6	PHROG	phrog_6616	tail protein	tail
UHGV-0177226_6	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0177226_6	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0177226_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177226_6	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0177226_7	PHROG	phrog_1194	NA	unknown function
UHGV-0177226_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0177226_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177226_8	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0177226_8	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0177226_8	COG	COG5412	Phage-related protein	NA
UHGV-0177226_8	Structural annotation	PF11172	NA	NA
UHGV-0177226_9	PHROG	phrog_706	NA	unknown function
UHGV-0177226_9	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0177226_9	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0177226_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177226_9	Structural annotation	PF06854	NA	NA
UHGV-0177226_10	PHROG	phrog_11299	NA	unknown function
UHGV-0177226_10	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0177226_10	Structural annotation	PF10666	NA	NA
UHGV-0177226_11	PHROG	phrog_3099	NA	unknown function
UHGV-0177226_11	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0177226_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177226_12	PHROG	phrog_3266	tail completion	connector
UHGV-0177226_12	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0177226_12	Structural annotation	PF12691	NA	NA
UHGV-0177226_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177226_13	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0177226_13	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0177226_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177226_13	Structural annotation	PF11114	NA	NA
UHGV-0177226_14	PHROG	phrog_3366	NA	unknown function
UHGV-0177226_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0177226_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177226_15	PHROG	phrog_1233	NA	unknown function
UHGV-0177226_15	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0177226_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177226_16	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0177226_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-0177226_17	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0177226_17	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0177226_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0177226_18	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0177226_19	PHROG	phrog_419	NA	unknown function
UHGV-0177226_19	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0177226_19	Structural annotation	PF14083	NA	NA
UHGV-0177226_20	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0177226_21	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0177226_21	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0177226_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177226_22	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0177226_22	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0177226_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177226_22	COG	COG2369	NA	NA
UHGV-0177226_22	Structural annotation	PF06152	NA	NA
UHGV-0177226_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177226_23	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0177226_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0177226_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177226_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177226_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0177226_25	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0177226_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0177226_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177226_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177226_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0177226_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177226_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177226_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177226_26	PHROG	phrog_33130	NA	unknown function
UHGV-0177226_26	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0177226_27	eggNOG-mapper	1235798.C817_05950	NA	NA
UHGV-0177226_29	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177226_29	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0177226_29	eggNOG-mapper	169963.lmo2276	NA	NA
UHGV-0177226_29	AcrCatalog	cluster_10901	NA	NA
UHGV-0177226_29	Pfam	PF00847	AP2 domain	AP2
UHGV-0177226_29	Structural annotation	PF00847	NA	NA
UHGV-0177226_31	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0177226_31	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0177226_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177226_31	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0177226_33	PHROG	phrog_15863	NA	unknown function
UHGV-0177226_33	UniRef90	UniRef90_A0A417UWU3	J domain-containing protein	NA
UHGV-0177226_33	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0177226_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0177226_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177226_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177226_38	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0177226_38	eggNOG-mapper	1232453.BAIF02000002_gene1306	helix-turn-helix	NA
UHGV-0177226_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177226_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177226_38	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-0177226_40	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0177226_40	UniRef90	UniRef90_A0A173TWB1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0177226_40	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0177226_40	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0177226_40	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0177226_40	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0177226_41	Structural annotation	PF14844	NA	NA
UHGV-0177226_43	Structural annotation	PF14084	NA	NA
UHGV-0177226_46	PHROG	phrog_1672	NA	unknown function
UHGV-0177226_46	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0177226_46	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0177226_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177226_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177226_47	UniRef90	UniRef90_A0A173TY56	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0177226_47	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177226_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177226_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177226_47	Structural annotation	PF01507, MF_00063, TIGR02055	NA	NA
UHGV-0177226_48	UniRef90	UniRef90_UPI001CD21EDD	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0177226_48	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177226_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177226_51	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0177226_53	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0177226_53	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0177226_53	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0177226_54	PHROG	phrog_1123	NA	unknown function
UHGV-0177226_54	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0177226_54	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0177226_54	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0177226_55	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177226_55	UniRef90	UniRef90_A0A416S3A2	Phage_rep_org_N domain-containing protein	NA
UHGV-0177226_55	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0177226_55	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0177226_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177226_56	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177226_56	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0177226_56	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0177226_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177226_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0177226_57	PHROG	phrog_7566	NA	unknown function
UHGV-0177226_57	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0177226_57	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0177226_58	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177226_58	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0177226_58	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0177226_58	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177226_59	PHROG	phrog_14970	NA	unknown function
UHGV-0177226_59	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0177226_59	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0177226_59	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0177226_59	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0177226_60	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0177226_60	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0177226_60	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0177226_60	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0177226_60	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0177226_64	PHROG	phrog_36464	NA	unknown function
UHGV-0177226_64	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0177226_64	Structural annotation	PF09035	NA	NA
UHGV-0177226_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177226_67	UniRef90	UniRef90_A0A173TZM8	Helix-turn-helix domain	NA
UHGV-0177226_67	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-0177226_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177226_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177226_68	UniRef90	UniRef90_A0A173TZ83	Helix-turn-helix domain	NA
UHGV-0177226_68	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0177226_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177226_68	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177226_69	PHROG	phrog_87	metallo-protease	other
UHGV-0177226_69	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0177226_69	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0177226_69	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0177226_69	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0177226_69	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0177226_70	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0177226_70	COG	COG4640	NA	NA
UHGV-0177226_71	KOfam	K14059	int; integrase	NA
UHGV-0177226_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0177226_71	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0177226_71	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0177226_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177226_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177226_71	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA