UHGV-0177232

Genome information

Genome length 41,394 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177232
vOTU ID	vOTU-046609
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584592
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.76
Jumbo phage	No

Genome content
Genome length	41,394 bps
GC content	41.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.41%
Average CDS length	618.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177232_1	PHROG	phrog_8684	NA	unknown function
UHGV-0177232_1	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0177232_1	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0177232_1	Pfam	PF09643	YopX protein	YopX
UHGV-0177232_3	PHROG	phrog_38832	NA	unknown function
UHGV-0177232_3	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0177232_3	Structural annotation	PF09038	NA	NA
UHGV-0177232_4	PHROG	phrog_15198	NA	unknown function
UHGV-0177232_4	UniRef90	UniRef90_A0A173SA50	NA	NA
UHGV-0177232_4	Pfam	PF04448	NA	DUF551
UHGV-0177232_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177232_7	UniRef90	UniRef90_UPI001C03418C	conserved phage C-terminal domain-containing protein	NA
UHGV-0177232_7	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0177232_7	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0177232_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177232_8	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177232_8	UniRef90	UniRef90_UPI000C78E8B2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177232_8	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0177232_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177232_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177232_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177232_10	PHROG	phrog_398	NA	unknown function
UHGV-0177232_10	UniRef90	UniRef90_A0A4P8IGL9	NA	NA
UHGV-0177232_10	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0177232_10	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0177232_10	Structural annotation	PF16784	NA	NA
UHGV-0177232_11	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177232_11	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0177232_11	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0177232_11	Pfam	PF06378	NA	DUF1071
UHGV-0177232_11	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0177232_13	Structural annotation	PF00412	NA	NA
UHGV-0177232_16	Pfam	PF11381	NA	DUF3185
UHGV-0177232_16	Structural annotation	PF12750	NA	NA
UHGV-0177232_18	PHROG	phrog_3773	NA	unknown function
UHGV-0177232_18	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0177232_22	UniRef90	UniRef90_A0A416W0Y7	XRE family transcriptional regulator	NA
UHGV-0177232_22	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177232_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177232_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177232_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177232_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177232_23	UniRef90	UniRef90_R9J0L9	HTH cro/C1-type domain-containing protein	NA
UHGV-0177232_23	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0177232_23	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177232_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177232_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177232_23	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0177232_24	PHROG	phrog_87	metallo-protease	other
UHGV-0177232_24	UniRef90	UniRef90_A0A316M7A2	Peptidase_M78 domain-containing protein	NA
UHGV-0177232_24	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0177232_24	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0177232_24	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0177232_24	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0177232_25	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0177232_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177232_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0177232_26	UniRef90	UniRef90_A0A173S7T2	Resolvase, N terminal domain	NA
UHGV-0177232_26	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0177232_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177232_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0177232_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177232_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177232_26	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0177232_27	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177232_27	PHROG	phrog_670	endolysin	lysis
UHGV-0177232_27	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177232_27	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0177232_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0177232_27	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0177232_27	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0177232_28	PHROG	phrog_443	holin	lysis
UHGV-0177232_28	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0177232_28	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0177232_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0177232_28	Structural annotation	PF16945	NA	NA
UHGV-0177232_29	PHROG	phrog_4105	NA	unknown function
UHGV-0177232_29	eggNOG-mapper	521003.COLINT_02361	NA	NA
UHGV-0177232_30	PHROG	phrog_19291	NA	unknown function
UHGV-0177232_30	eggNOG-mapper	879305.HMPREF9290_0127	NA	NA
UHGV-0177232_30	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0177232_31	UniRef90	UniRef90_UPI0018994E65	discoidin domain-containing protein	NA
UHGV-0177232_31	eggNOG-mapper	243164.DET1075	NA	NA
UHGV-0177232_32	PHROG	phrog_18190	NA	unknown function
UHGV-0177232_32	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0177232_32	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0177232_33	PHROG	phrog_1194	NA	unknown function
UHGV-0177232_33	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0177232_33	Pfam	PF20458	NA	DUF6711
UHGV-0177232_33	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177232_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177232_34	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0177232_34	COG	COG5412	Phage-related protein	NA
UHGV-0177232_35	PHROG	phrog_706	NA	unknown function
UHGV-0177232_35	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0177232_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177232_35	Structural annotation	PF06854	NA	NA
UHGV-0177232_36	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0177232_36	Structural annotation	PF10666	NA	NA
UHGV-0177232_37	PHROG	phrog_3099	NA	unknown function
UHGV-0177232_37	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0177232_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177232_38	PHROG	phrog_3266	tail completion	connector
UHGV-0177232_38	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0177232_38	Structural annotation	PF12691	NA	NA
UHGV-0177232_39	PHROG	phrog_3366	NA	unknown function
UHGV-0177232_39	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0177232_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177232_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177232_40	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0177232_40	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0177232_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177232_41	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0177232_41	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0177232_41	Structural annotation	PF06673, PF13629, MF_04119, TIGR04387, NF005261, COG4653	NA	NA
UHGV-0177232_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177232_42	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0177232_42	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0177232_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177232_43	Structural annotation	PF16244	NA	NA
UHGV-0177232_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177232_44	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0177232_44	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-0177232_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177232_44	COG	COG2369	NA	NA
UHGV-0177232_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177232_45	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0177232_45	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177232_45	Structural annotation	PF11114	NA	NA
UHGV-0177232_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177232_46	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0177232_46	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0177232_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177232_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177232_47	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177232_47	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0177232_47	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0177232_47	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177232_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177232_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177232_47	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177232_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0177232_48	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0177232_48	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0177232_48	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0177232_48	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0177232_48	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177232_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0177232_48	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0177232_49	eggNOG-mapper	457421.CBFG_03465	NA	NA
UHGV-0177232_51	Structural annotation	PF18358	NA	NA
UHGV-0177232_52	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0177232_52	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0177232_52	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0177232_52	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0177232_52	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0177232_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0177232_52	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0177232_52	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0177232_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177232_53	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177232_53	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0177232_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177232_53	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0177232_55	PHROG	phrog_874	NA	unknown function
UHGV-0177232_55	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0177232_55	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0177232_56	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177232_56	UniRef90	UniRef90_A0A173RDU7	HNH endonuclease	NA
UHGV-0177232_56	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0177232_56	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177232_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177232_56	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0177232_57	PHROG	phrog_20593	NA	unknown function
UHGV-0177232_58	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0177232_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177232_59	Structural annotation	PF14282	NA	NA
UHGV-0177232_61	Pfam	PF09643	YopX protein	YopX