UHGV-0177237

Genome information

Genome length 33,575 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177237
vOTU ID	vOTU-046610
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584597
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.71
Jumbo phage	No

Genome content
Genome length	33,575 bps
GC content	56.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.68%
Average CDS length	624.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177237_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0177237_1	PHROG	phrog_7	endolysin	lysis
UHGV-0177237_1	UniRef90	UniRef90_A0A1D7Z4Q6	Lysozyme	NA
UHGV-0177237_1	eggNOG-mapper	640513.Entas_4674	lysozyme	NA
UHGV-0177237_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0177237_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0177237_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0177237_1	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0177237_2	PHROG	phrog_443	holin	lysis
UHGV-0177237_2	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0177237_2	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0177237_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0177237_2	Structural annotation	PF16945	NA	NA
UHGV-0177237_3	PHROG	phrog_1863	NA	unknown function
UHGV-0177237_3	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0177237_8	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0177237_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0177237_8	UniRef90	UniRef90_UPI000E4E93AA	phage tail tape measure protein	NA
UHGV-0177237_8	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0177237_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0177237_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0177237_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0177237_9	PHROG	phrog_706	NA	unknown function
UHGV-0177237_9	UniRef90	UniRef90_UPI0006828F20	Gp15 family bacteriophage protein	NA
UHGV-0177237_9	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0177237_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177237_9	Structural annotation	PF06854	NA	NA
UHGV-0177237_11	PHROG	phrog_820	major tail protein	tail
UHGV-0177237_11	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0177237_11	eggNOG-mapper	411471.SUBVAR_06988	NA	NA
UHGV-0177237_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177237_12	PHROG	phrog_3266	tail completion	connector
UHGV-0177237_12	UniRef90	UniRef90_UPI000F637EFF	chloramphenicol resistance protein	NA
UHGV-0177237_12	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0177237_12	Structural annotation	PF12691	NA	NA
UHGV-0177237_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177237_13	UniRef90	UniRef90_UPI001C10177D	minor capsid protein	NA
UHGV-0177237_13	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0177237_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177237_13	Structural annotation	PF11114	NA	NA
UHGV-0177237_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0177237_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0177237_16	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0177237_16	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0177237_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177237_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177237_17	UniRef90	UniRef90_A0A396SVB1	Phage capsid protein	NA
UHGV-0177237_17	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-0177237_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177237_17	Structural annotation	PF06810	NA	NA
UHGV-0177237_18	Structural annotation	PF11344	NA	NA
UHGV-0177237_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177237_19	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-0177237_19	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0177237_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177237_19	COG	COG2369	NA	NA
UHGV-0177237_19	Structural annotation	PF06152	NA	NA
UHGV-0177237_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177237_20	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0177237_20	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0177237_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177237_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177237_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177237_21	UniRef90	UniRef90_UPI0019684892	phage terminase large subunit	NA
UHGV-0177237_21	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0177237_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177237_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177237_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177237_22	PHROG	phrog_2412	NA	unknown function
UHGV-0177237_22	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0177237_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0177237_23	PHROG	phrog_12862	NA	unknown function
UHGV-0177237_23	UniRef90	UniRef90_UPI0006BBD65F	site-specific DNA-methyltransferase	NA
UHGV-0177237_23	eggNOG-mapper	1151292.QEW_0441	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0177237_23	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0177237_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0177237_23	COG	COG0863	DNA modification methylase	NA
UHGV-0177237_23	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0177237_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177237_24	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0177237_24	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0177237_24	Pfam	PF07374	NA	DUF1492
UHGV-0177237_24	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0177237_25	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0177237_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177237_25	Structural annotation	PF13560, NF007257, COG1476	NA	NA
UHGV-0177237_28	PHROG	phrog_1029	NA	unknown function
UHGV-0177237_28	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0177237_28	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0177237_29	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0177237_29	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0177237_29	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0177237_30	PHROG	phrog_16304	NA	unknown function
UHGV-0177237_30	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0177237_30	Pfam	PF19808	NA	DUF6291
UHGV-0177237_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177237_30	Structural annotation	PF19808	NA	NA
UHGV-0177237_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177237_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177237_31	UniRef90	UniRef90_UPI001BB47F69	single-stranded DNA-binding protein	NA
UHGV-0177237_31	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0177237_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177237_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177237_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177237_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177237_31	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0177237_32	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0177237_32	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0177237_32	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-0177237_32	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0177237_32	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0177237_32	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0177237_32	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0177237_33	PHROG	phrog_862	NA	unknown function
UHGV-0177237_33	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0177237_33	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0177237_34	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0177237_34	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177237_34	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-0177237_34	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0177237_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-0177237_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0177237_34	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0177237_40	UniRef90	UniRef90_UPI0010304EFA	helix-turn-helix domain-containing protein	NA
UHGV-0177237_40	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0177237_40	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0177237_41	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0177237_41	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0177237_41	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0177237_43	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-0177237_43	eggNOG-mapper	1280692.AUJL01000011_gene3217	NA	NA
UHGV-0177237_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0177237_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0177237_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0177237_44	UniRef90	UniRef90_A0A316TAV5	HTH cro/C1-type domain-containing protein	NA
UHGV-0177237_44	eggNOG-mapper	1235792.C808_03098	Peptidase S24-like	NA
UHGV-0177237_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177237_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0177237_44	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0177237_44	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0177237_45	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0177237_45	UniRef90	UniRef90_A0A174ZSI5	Phage minor capsid protein 2	NA
UHGV-0177237_45	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-0177237_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177237_45	COG	COG2369	NA	NA
UHGV-0177237_46	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0177237_46	PHROG	phrog_9764	NA	unknown function
UHGV-0177237_46	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0177237_46	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0177237_46	PADLOC	AbiQ	AbiQ	Abi
UHGV-0177237_46	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0177237_46	Structural annotation	PF13958	NA	NA
UHGV-0177237_47	KOfam	K14059	int; integrase	NA
UHGV-0177237_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0177237_47	UniRef90	UniRef90_A0A0M2NK43	Phage integrase	NA
UHGV-0177237_47	eggNOG-mapper	877414.ATWA01000071_gene1153	Belongs to the 'phage' integrase family	NA
UHGV-0177237_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0177237_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177237_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177237_47	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0177237_48	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0177237_48	UniRef90	UniRef90_A0A6G3LX22	XRE family transcriptional regulator	NA
UHGV-0177237_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177237_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177237_49	KOfam	K21470	ycbB; L,D-transpeptidase YcbB	NA
UHGV-0177237_49	PHROG	phrog_2649	endolysin	lysis
UHGV-0177237_49	UniRef90	UniRef90_A0A644T908	NlpC/P60 domain-containing protein	NA
UHGV-0177237_49	eggNOG-mapper	1221522.B723_06280	NA	NA
UHGV-0177237_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0177237_49	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA