UHGV-0177259

Genome information

Genome length 35,030 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177259
vOTU ID	vOTU-046612
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571139
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length	35,030 bps
GC content	62.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.18%
Average CDS length	551.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177259_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0177259_2	PHROG	phrog_27610	NA	unknown function
UHGV-0177259_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0177259_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0177259_3	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0177259_3	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0177259_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0177259_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0177259_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0177259_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0177259_4	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177259_4	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0177259_4	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0177259_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177259_4	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0177259_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0177259_6	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0177259_6	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177259_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177259_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0177259_6	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0177259_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177259_7	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0177259_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177259_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177259_8	UniRef90	UniRef90_A0A1Y3SLP5	HTH cro/C1-type domain-containing protein	NA
UHGV-0177259_8	eggNOG-mapper	1410650.JHWL01000004_gene1768	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177259_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177259_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177259_9	Structural annotation	PF09202, MF_01819, NF002926, COG3432	NA	NA
UHGV-0177259_10	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0177259_10	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0177259_11	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0177259_11	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0177259_11	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0177259_11	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0177259_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0177259_11	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0177259_12	KOfam	K14059	int; integrase	NA
UHGV-0177259_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0177259_12	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0177259_12	eggNOG-mapper	1469948.JPNB01000003_gene298	Belongs to the 'phage' integrase family	NA
UHGV-0177259_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177259_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177259_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0177259_13	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0177259_13	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0177259_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177259_19	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0177259_19	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0177259_20	PHROG	phrog_21357	endolysin	lysis
UHGV-0177259_20	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0177259_20	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0177259_20	Pfam	PF05257	CHAP domain	CHAP
UHGV-0177259_20	COG	COG1388	LysM repeat	NA
UHGV-0177259_20	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0177259_21	PHROG	phrog_13256	NA	unknown function
UHGV-0177259_21	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0177259_22	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0177259_22	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0177259_23	PHROG	phrog_4105	NA	unknown function
UHGV-0177259_26	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0177259_27	PHROG	phrog_13589	NA	unknown function
UHGV-0177259_27	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0177259_28	PHROG	phrog_31538	NA	unknown function
UHGV-0177259_29	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0177259_31	PHROG	phrog_32744	NA	unknown function
UHGV-0177259_31	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0177259_31	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0177259_33	PHROG	phrog_23464	NA	unknown function
UHGV-0177259_33	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0177259_33	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0177259_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0177259_33	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0177259_35	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0177259_36	PHROG	phrog_88	major tail protein	tail
UHGV-0177259_36	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0177259_36	COG	COG5492	NA	NA
UHGV-0177259_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0177259_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177259_37	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0177259_37	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0177259_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0177259_37	Structural annotation	TIGR01725	NA	NA
UHGV-0177259_38	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0177259_38	Structural annotation	PF05657	NA	NA
UHGV-0177259_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-0177259_39	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0177259_39	eggNOG-mapper	1540257.JQMW01000004_gene414	head-tail adaptor	NA
UHGV-0177259_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0177259_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177259_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0177259_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177259_40	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0177259_40	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0177259_40	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0177259_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0177259_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177259_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177259_41	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0177259_41	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0177259_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177259_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177259_41	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177259_42	PHROG	phrog_16951	NA	unknown function
UHGV-0177259_42	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0177259_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0177259_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177259_43	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0177259_43	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0177259_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177259_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177259_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177259_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177259_44	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177259_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177259_45	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0177259_45	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0177259_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177259_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177259_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177259_45	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0177259_46	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0177259_46	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0177259_46	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0177259_46	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177259_46	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0177259_46	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0177259_46	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177259_47	PHROG	phrog_21498	NA	unknown function
UHGV-0177259_47	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0177259_47	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0177259_47	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177259_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177259_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177259_47	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0177259_48	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177259_48	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0177259_48	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0177259_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177259_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177259_48	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0177259_49	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0177259_49	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0177259_49	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0177259_49	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0177259_50	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177259_50	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0177259_50	Structural annotation	PF11726	NA	NA
UHGV-0177259_53	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0177259_53	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0177259_53	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0177259_53	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0177259_55	UniRef90	UniRef90_UPI00145A074D	NA	NA
UHGV-0177259_58	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177259_58	PHROG	phrog_27290	NA	unknown function
UHGV-0177259_58	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0177259_58	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0177259_58	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177259_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177259_58	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177259_58	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0177259_59	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0177259_59	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177259_59	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0177259_59	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0177259_59	Pfam	PF13614	AAA domain	AAA_31
UHGV-0177259_59	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0177259_59	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA