UHGV-0177297

Genome information

Genome length 12,215 bps

CDS count 18

Completeness 91.44% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177297
vOTU ID	vOTU-063543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574900
BioSample	NA
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.74
Jumbo phage	No

Genome content
Genome length	12,215 bps
GC content	50.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	94.97%
Average CDS length	648.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177297_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0177297_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0177297_3	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0177297_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0177297_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0177297_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0177297_4	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0177297_4	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0177297_4	eggNOG-mapper	1308866.J416_13299	G5	NA
UHGV-0177297_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0177297_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0177297_4	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0177297_5	Structural annotation	PF20934	NA	NA
UHGV-0177297_6	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0177297_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177297_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0177297_10	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0177297_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0177297_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177297_11	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0177297_11	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0177297_11	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0177297_11	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0177297_11	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0177297_11	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0177297_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0177297_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0177297_12	UniRef90	UniRef90_A0A4Q0U6P8	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0177297_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0177297_12	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0177297_17	Structural annotation	PF01503, MF_01019, NF001613, COG1694	NA	NA