UHGV-0177322

Genome information

Genome length 40,506 bps

CDS count 75

Completeness 96.10% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177322
vOTU ID	vOTU-060785
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589730
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.15
Jumbo phage	No

Genome content
Genome length	40,506 bps
GC content	53.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.85%
Average CDS length	495.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177322_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177322_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177322_1	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0177322_1	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177322_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177322_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177322_1	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0177322_4	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0177322_5	PHROG	phrog_3136	NA	unknown function
UHGV-0177322_5	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0177322_5	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0177322_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0177322_5	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0177322_10	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0177322_10	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-0177322_10	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-0177322_10	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0177322_10	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0177322_10	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0177322_11	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0177322_12	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0177322_12	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0177322_12	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0177322_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177322_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177322_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177322_13	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177322_13	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0177322_13	eggNOG-mapper	985665.HPL003_12065	DNA methylase	NA
UHGV-0177322_13	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177322_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177322_13	COG	COG0863	DNA modification methylase	NA
UHGV-0177322_13	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0177322_14	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0177322_14	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0177322_14	UniRef90	UniRef90_A0A516MP09	Putative adenine modification enzyme	NA
UHGV-0177322_14	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0177322_14	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0177322_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177322_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0177322_16	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0177322_16	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0177322_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177322_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0177322_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177322_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177322_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177322_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177322_17	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0177322_17	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0177322_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177322_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177322_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177322_19	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0177322_19	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0177322_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177322_19	COG	COG2369	NA	NA
UHGV-0177322_19	Structural annotation	PF06152	NA	NA
UHGV-0177322_20	Structural annotation	PF19593	NA	NA
UHGV-0177322_21	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0177322_21	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0177322_21	Structural annotation	PF06810	NA	NA
UHGV-0177322_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177322_22	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0177322_22	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0177322_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177322_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177322_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177322_22	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177322_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177322_23	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0177322_24	PHROG	phrog_3366	NA	unknown function
UHGV-0177322_24	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0177322_24	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0177322_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177322_25	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0177322_25	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0177322_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177322_25	Structural annotation	PF11114	NA	NA
UHGV-0177322_26	PHROG	phrog_3266	tail completion	connector
UHGV-0177322_26	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0177322_26	Structural annotation	PF12691	NA	NA
UHGV-0177322_27	PHROG	phrog_3099	NA	unknown function
UHGV-0177322_27	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0177322_27	Structural annotation	TIGR02126	NA	NA
UHGV-0177322_28	PHROG	phrog_11299	NA	unknown function
UHGV-0177322_28	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0177322_28	Structural annotation	PF10666	NA	NA
UHGV-0177322_29	PHROG	phrog_706	NA	unknown function
UHGV-0177322_29	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0177322_29	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0177322_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177322_29	Structural annotation	PF06854	NA	NA
UHGV-0177322_30	PHROG	phrog_37750	NA	unknown function
UHGV-0177322_30	UniRef90	UniRef90_UPI001D06EB78	NA	NA
UHGV-0177322_30	eggNOG-mapper	1449063.JMLS01000022_gene6405	NA	NA
UHGV-0177322_30	Structural annotation	PF16146, MF_00867, COG5007	NA	NA
UHGV-0177322_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177322_31	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0177322_31	COG	COG1511	NA	NA
UHGV-0177322_31	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0177322_32	PHROG	phrog_1194	NA	unknown function
UHGV-0177322_32	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0177322_32	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177322_33	PHROG	phrog_32744	NA	unknown function
UHGV-0177322_33	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0177322_33	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0177322_35	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0177322_36	PHROG	phrog_31538	NA	unknown function
UHGV-0177322_37	PHROG	phrog_13589	NA	unknown function
UHGV-0177322_37	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0177322_38	PHROG	phrog_37900	NA	unknown function
UHGV-0177322_38	UniRef90	UniRef90_UPI001897C7B4	NA	NA
UHGV-0177322_38	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0177322_38	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0177322_38	Pfam	PF19789	NA	DUF6273
UHGV-0177322_38	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0177322_38	Structural annotation	PF19789, PF14686	NA	NA
UHGV-0177322_39	PHROG	phrog_1863	NA	unknown function
UHGV-0177322_39	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0177322_40	PHROG	phrog_13256	NA	unknown function
UHGV-0177322_40	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0177322_42	PHROG	phrog_18955	NA	unknown function
UHGV-0177322_42	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0177322_42	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0177322_42	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0177322_42	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0177322_43	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0177322_43	PHROG	phrog_894	endolysin	lysis
UHGV-0177322_43	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0177322_43	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0177322_43	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0177322_43	COG	COG3108	NA	NA
UHGV-0177322_43	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0177322_44	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0177322_45	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0177322_46	UniRef90	UniRef90_A0A096AZ46	HTH cro/C1-type domain-containing protein	NA
UHGV-0177322_46	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177322_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177322_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177322_46	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0177322_49	PHROG	phrog_3754	NA	unknown function
UHGV-0177322_49	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0177322_50	PHROG	phrog_21718	NA	unknown function
UHGV-0177322_50	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177322_51	PHROG	phrog_22984	NA	unknown function
UHGV-0177322_52	PHROG	phrog_16490	NA	unknown function
UHGV-0177322_52	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177322_53	PHROG	phrog_20016	NA	unknown function
UHGV-0177322_53	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0177322_53	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0177322_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177322_54	Structural annotation	PF12510	NA	NA
UHGV-0177322_55	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0177322_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177322_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0177322_56	UniRef90	UniRef90_A0A3A9ED02	Site-specific recombinase	NA
UHGV-0177322_56	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0177322_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177322_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177322_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177322_56	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0177322_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177322_57	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0177322_57	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0177322_61	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0177322_62	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0177322_62	eggNOG-mapper	1458462.JNLK01000001_gene1760	sequence-specific DNA binding	NA
UHGV-0177322_62	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177322_62	COG	COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	NA
UHGV-0177322_62	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177322_63	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0177322_63	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0177322_67	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177322_69	PHROG	phrog_4973	NA	unknown function
UHGV-0177322_69	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0177322_69	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0177322_71	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177322_71	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0177322_71	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0177322_71	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0177322_72	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177322_72	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0177322_72	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177322_72	Structural annotation	PF05772	NA	NA
UHGV-0177322_73	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177322_73	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0177322_73	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177322_74	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177322_74	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177322_74	UniRef90	UniRef90_A0A1Q6RGI0	Single-stranded DNA-binding protein	NA
UHGV-0177322_74	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0177322_74	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177322_74	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177322_74	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177322_74	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177322_74	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177322_75	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177322_75	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0177322_75	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA