UHGV-0177345

Genome information

Genome length 32,463 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9649

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177345
vOTU ID	vOTU-046613
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591535
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9649
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.32
Jumbo phage	No

Genome content
Genome length	32,463 bps
GC content	56.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.19%
Average CDS length	682.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177345_1	PHROG	phrog_199	holin	lysis
UHGV-0177345_1	UniRef90	UniRef90_UPI00189A1D4C	phage holin family protein	NA
UHGV-0177345_1	eggNOG-mapper	1121334.KB911073_gene1876	toxin secretion phage lysis holin	NA
UHGV-0177345_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0177345_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0177345_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0177345_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0177345_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0177345_2	PHROG	phrog_291	endolysin	lysis
UHGV-0177345_2	UniRef90	UniRef90_R6BDP1	SPOR domain-containing protein	NA
UHGV-0177345_2	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0177345_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177345_2	COG	COG1388	LysM repeat	NA
UHGV-0177345_2	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0177345_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0177345_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0177345_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0177345_5	UniRef90	UniRef90_UPI001D089E29	reverse transcriptase domain-containing protein	NA
UHGV-0177345_5	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0177345_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0177345_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0177345_5	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0177345_6	PHROG	phrog_17147	NA	unknown function
UHGV-0177345_6	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-0177345_6	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0177345_6	Structural annotation	PF10651	NA	NA
UHGV-0177345_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0177345_8	UniRef90	UniRef90_A0A3D5L0J3	Prophage_tail domain-containing protein	NA
UHGV-0177345_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0177345_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177345_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177345_8	COG	COG4926	Phage-related protein	NA
UHGV-0177345_8	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0177345_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177345_9	UniRef90	UniRef90_A0A0X8V9V4	Phage tail protein	NA
UHGV-0177345_9	eggNOG-mapper	585506.HMPREF0877_0163	tail component	NA
UHGV-0177345_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177345_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0177345_10	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0177345_10	UniRef90	UniRef90_UPI0006C051F8	phage tail tape measure protein	NA
UHGV-0177345_10	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-0177345_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0177345_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0177345_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0177345_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0177345_12	PHROG	phrog_1021	NA	unknown function
UHGV-0177345_13	PHROG	phrog_885	major tail protein	tail
UHGV-0177345_13	UniRef90	UniRef90_UPI000BE41A82	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0177345_13	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0177345_13	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0177345_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0177345_14	Structural annotation	PF12691	NA	NA
UHGV-0177345_15	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0177345_15	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0177345_15	Structural annotation	TIGR01725	NA	NA
UHGV-0177345_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0177345_16	UniRef90	UniRef90_UPI00164E320F	phage head closure protein	NA
UHGV-0177345_16	eggNOG-mapper	202752.JL53_03765	head-tail adaptor	NA
UHGV-0177345_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0177345_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177345_17	PHROG	phrog_5223	neck protein	connector
UHGV-0177345_17	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-0177345_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177345_18	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0177345_18	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0177345_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177345_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177345_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177345_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177345_19	KOfam	K06904	NA	NA
UHGV-0177345_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0177345_19	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0177345_19	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0177345_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0177345_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0177345_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0177345_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0177345_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177345_20	UniRef90	UniRef90_A0A316PZH6	Phage portal protein	NA
UHGV-0177345_20	eggNOG-mapper	411470.RUMGNA_02063	Phage portal protein	NA
UHGV-0177345_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177345_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177345_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177345_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177345_21	UniRef90	UniRef90_A0A4V2S9X1	Phage terminase large subunit-like protein	NA
UHGV-0177345_21	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0177345_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177345_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177345_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177345_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0177345_22	PHROG	phrog_1066	NA	unknown function
UHGV-0177345_22	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0177345_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177345_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177345_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177345_23	UniRef90	UniRef90_A0A4V1YA37	HNH endonuclease	NA
UHGV-0177345_23	eggNOG-mapper	411902.CLOBOL_03884	HNH endonuclease	NA
UHGV-0177345_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177345_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177345_24	eggNOG-mapper	1507.HMPREF0262_00210	NA	NA
UHGV-0177345_24	Structural annotation	TIGR01636	NA	NA
UHGV-0177345_25	KOfam	K03660	OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]	NA
UHGV-0177345_25	UniRef90	UniRef90_A0A1Y3RS13	ENDO3c domain-containing protein	NA
UHGV-0177345_25	eggNOG-mapper	1123075.AUDP01000006_gene2531	8-oxoguanine DNA glycosylase	NA
UHGV-0177345_25	Pfam	PF07934	8-oxoguanine DNA glycosylase, N-terminal domain	OGG_N
UHGV-0177345_25	COG	COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	NA
UHGV-0177345_25	Structural annotation	PF07934, PF00730, MF_00942, TIGR00588, COG0122	NA	NA
UHGV-0177345_26	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177345_26	UniRef90	UniRef90_A0A6S6XBJ8	Tn7_Tnp_TnsA_N domain-containing protein	NA
UHGV-0177345_26	Pfam	PF06356	NA	DUF1064
UHGV-0177345_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177345_27	eggNOG-mapper	97139.C824_00747	NA	NA
UHGV-0177345_27	Structural annotation	PF21578	NA	NA
UHGV-0177345_29	PHROG	phrog_3136	NA	unknown function
UHGV-0177345_29	UniRef90	UniRef90_A0A2V2FDG6	ASCH domain-containing protein	NA
UHGV-0177345_29	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0177345_29	Pfam	PF04266	ASCH domain	ASCH
UHGV-0177345_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0177345_29	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0177345_30	PHROG	phrog_17284	NA	unknown function
UHGV-0177345_30	UniRef90	UniRef90_UPI001CF3F91D	DNA cytosine methyltransferase	NA
UHGV-0177345_30	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0177345_30	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0177345_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177345_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177345_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177345_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177345_31	UniRef90	UniRef90_UPI00189F9B8A	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177345_31	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0177345_31	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0177345_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177345_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177345_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177345_31	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0177345_36	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0177345_36	UniRef90	UniRef90_A0A380F7Q0	Phage-associated homing endonuclease	NA
UHGV-0177345_36	eggNOG-mapper	1141106.CAIB01000128_gene1076	HNH nucleases	NA
UHGV-0177345_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177345_42	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0177345_42	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0177345_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177345_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177345_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177345_43	UniRef90	UniRef90_A0A1Y4GX41	HTH cro/C1-type domain-containing protein	NA
UHGV-0177345_43	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-0177345_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177345_43	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0177345_43	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0177345_44	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0177345_44	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0177345_44	UniRef90	UniRef90_A0A3D0EC75	Exonuclease	NA
UHGV-0177345_44	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0177345_44	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0177345_44	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0177345_44	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0177345_44	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0177345_44	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0177345_44	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0177345_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177345_45	PHROG	phrog_95	integrase	integration and excision
UHGV-0177345_45	UniRef90	UniRef90_UPI000B3A7453	recombinase family protein	NA
UHGV-0177345_45	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0177345_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177345_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-0177345_45	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177345_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177345_45	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA