UHGV-0177349

Genome information

Genome length 43,367 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177349
vOTU ID	vOTU-046615
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591538
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.15
Jumbo phage	No

Genome content
Genome length	43,367 bps
GC content	57.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.91%
Average CDS length	667.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177349_1	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0177349_2	PHROG	phrog_4105	NA	unknown function
UHGV-0177349_2	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0177349_2	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0177349_3	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0177349_3	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0177349_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0177349_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0177349_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0177349_3	Structural annotation	PF00877, PF18342, NF033742, COG0791, COG3103	NA	NA
UHGV-0177349_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0177349_5	Structural annotation	NF040910	NA	NA
UHGV-0177349_6	PHROG	phrog_918	NA	unknown function
UHGV-0177349_6	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0177349_6	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0177349_6	Pfam	PF19791	NA	DUF6275
UHGV-0177349_6	Structural annotation	PF19791	NA	NA
UHGV-0177349_8	PHROG	phrog_17134	NA	unknown function
UHGV-0177349_9	PHROG	phrog_22978	NA	unknown function
UHGV-0177349_9	UniRef90	UniRef90_UPI001C019A6F	OmpH family outer membrane protein	NA
UHGV-0177349_9	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0177349_10	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0177349_12	PHROG	phrog_372	tail protein	tail
UHGV-0177349_12	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0177349_12	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0177349_12	Pfam	PF05895	NA	DUF859
UHGV-0177349_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0177349_12	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0177349_13	Structural annotation	NF038340	NA	NA
UHGV-0177349_14	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0177349_14	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0177349_14	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0177349_15	PHROG	phrog_12105	NA	unknown function
UHGV-0177349_15	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0177349_17	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0177349_17	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0177349_17	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-0177349_17	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0177349_17	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177349_18	PHROG	phrog_13908	NA	unknown function
UHGV-0177349_18	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0177349_18	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0177349_19	KOfam	K07584	NA	NA
UHGV-0177349_19	PHROG	phrog_4478	peptidase	other
UHGV-0177349_19	UniRef90	UniRef90_A0A7C6L8N4	Ribosomal-processing cysteine protease Prp	NA
UHGV-0177349_19	eggNOG-mapper	555088.DealDRAFT_1009	Pfam:Peptidase_C108	NA
UHGV-0177349_19	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0177349_19	COG	COG2868	NA	NA
UHGV-0177349_19	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0177349_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177349_20	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0177349_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0177349_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177349_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177349_21	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0177349_21	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0177349_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177349_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177349_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177349_22	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0177349_26	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0177349_26	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0177349_30	eggNOG-mapper	1280664.AUIX01000040_gene2326	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0177349_30	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0177349_31	PHROG	phrog_6160	NA	unknown function
UHGV-0177349_31	eggNOG-mapper	411464.DESPIG_00769	NA	NA
UHGV-0177349_32	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0177349_32	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0177349_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177349_33	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0177349_33	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0177349_33	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0177349_35	PHROG	phrog_21498	NA	unknown function
UHGV-0177349_35	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0177349_35	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-0177349_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177349_35	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0177349_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177349_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177349_36	UniRef90	UniRef90_UPI0009EAC172	DNA cytosine methyltransferase	NA
UHGV-0177349_36	eggNOG-mapper	397291.C804_05220	C-5 cytosine-specific DNA methylase	NA
UHGV-0177349_36	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0177349_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177349_36	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0177349_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177349_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177349_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177349_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177349_39	UniRef90	UniRef90_A0A849ZX07	Single-stranded DNA-binding protein	NA
UHGV-0177349_39	eggNOG-mapper	926550.CLDAP_14930	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0177349_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177349_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177349_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177349_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177349_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177349_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177349_53	UniRef90	UniRef90_A0A3A9I218	XRE family transcriptional regulator	NA
UHGV-0177349_53	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177349_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177349_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177349_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177349_55	KOfam	K14059	int; integrase	NA
UHGV-0177349_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0177349_55	UniRef90	UniRef90_A0A1C6JHT2	Site-specific recombinase XerD	NA
UHGV-0177349_55	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-0177349_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177349_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177349_55	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0177349_59	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0177349_59	Structural annotation	PF00196, MF_00674, TIGR02985, COG2771	NA	NA