UHGV-0177370

Genome information

Genome length 56,685 bps

CDS count 81

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177370
vOTU ID	vOTU-046619
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585232
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.36
Jumbo phage	No

Genome content
Genome length	56,685 bps
GC content	45.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	93.03%
Average CDS length	654.33 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177370_3	PHROG	phrog_1485	NA	unknown function
UHGV-0177370_3	UniRef90	UniRef90_UPI001C127ADA	nucleotide modification associated domain-containing protein	NA
UHGV-0177370_3	eggNOG-mapper	272562.CA_C1607	NA	NA
UHGV-0177370_3	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0177370_5	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177370_5	eggNOG-mapper	478749.BRYFOR_08559	NA	NA
UHGV-0177370_5	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0177370_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0177370_6	UniRef90	UniRef90_A0A4Q5C8W0	Helicase ATP-binding domain-containing protein	NA
UHGV-0177370_6	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-0177370_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0177370_6	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0177370_7	UniRef90	UniRef90_A0A4D6E4Q9	Hydrolase	NA
UHGV-0177370_7	eggNOG-mapper	428125.CLOLEP_01398	NA	NA
UHGV-0177370_7	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0177370_8	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177370_8	UniRef90	UniRef90_A0A6M3SVC0	Cas4 family exonuclease	NA
UHGV-0177370_8	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0177370_8	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0177370_9	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0177370_9	UniRef90	UniRef90_A0A5J6D7Z5	Helix-turn-helix DNA binding domain protein	NA
UHGV-0177370_9	eggNOG-mapper	691965.D4P7L7_9CAUD	NA	NA
UHGV-0177370_9	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0177370_9	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0177370_9	Structural annotation	PF05183	NA	NA
UHGV-0177370_10	PHROG	phrog_4303	NA	unknown function
UHGV-0177370_10	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-0177370_11	PHROG	phrog_4259	NA	unknown function
UHGV-0177370_11	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0177370_12	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177370_12	UniRef90	UniRef90_A0A6M3SV30	HNH endonuclease	NA
UHGV-0177370_12	eggNOG-mapper	742733.HMPREF9469_05036	NA	NA
UHGV-0177370_13	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0177370_13	UniRef90	UniRef90_A0A411CTF0	Head-to-tail connector complex protein	NA
UHGV-0177370_13	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0177370_14	PHROG	phrog_7021	NA	unknown function
UHGV-0177370_14	eggNOG-mapper	478749.BRYFOR_08525	NA	NA
UHGV-0177370_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177370_15	UniRef90	UniRef90_D4N0R4	Phage terminase-like protein, large subunit	NA
UHGV-0177370_15	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-0177370_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177370_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177370_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177370_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177370_16	PHROG	phrog_32444	NA	unknown function
UHGV-0177370_16	UniRef90	UniRef90_A0A5J6TED3	Amidase	NA
UHGV-0177370_16	Structural annotation	PF21435, NF011786	NA	NA
UHGV-0177370_18	PHROG	phrog_32444	NA	unknown function
UHGV-0177370_18	eggNOG-mapper	665956.HMPREF1032_00673	NA	NA
UHGV-0177370_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177370_20	UniRef90	UniRef90_A0A7X5EBN7	Phage portal protein	NA
UHGV-0177370_20	eggNOG-mapper	742740.HMPREF9474_02271	Phage portal protein	NA
UHGV-0177370_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177370_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177370_21	KOfam	K06904	NA	NA
UHGV-0177370_21	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0177370_21	UniRef90	UniRef90_A0A2V2EP61	Phage major capsid protein	NA
UHGV-0177370_21	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0177370_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0177370_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177370_21	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0177370_23	PHROG	phrog_4270	NA	unknown function
UHGV-0177370_23	eggNOG-mapper	742740.HMPREF9474_02268	NA	NA
UHGV-0177370_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0177370_24	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0177370_24	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0177370_24	Structural annotation	PF20765	NA	NA
UHGV-0177370_25	PHROG	phrog_2645	major tail protein	tail
UHGV-0177370_25	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-0177370_25	eggNOG-mapper	1476888.X4Y7Z1_9CAUD	peptidase activity	NA
UHGV-0177370_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0177370_27	PHROG	phrog_4282	NA	unknown function
UHGV-0177370_27	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0177370_28	PHROG	phrog_4338	NA	unknown function
UHGV-0177370_28	eggNOG-mapper	411460.RUMTOR_01339	NA	NA
UHGV-0177370_31	UniRef90	UniRef90_UPI00156DFFED	HK97 gp10 family phage protein	NA
UHGV-0177370_31	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0177370_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177370_31	Structural annotation	TIGR01725	NA	NA
UHGV-0177370_32	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0177370_32	UniRef90	UniRef90_UPI001D069537	tape measure protein	NA
UHGV-0177370_32	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-0177370_32	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0177370_32	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0177370_32	COG	COG5412	Phage-related protein	NA
UHGV-0177370_33	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-0177370_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177370_34	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-0177370_34	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0177370_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177370_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0177370_35	PHROG	phrog_13289	tail protein	tail
UHGV-0177370_35	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0177370_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177370_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177370_35	COG	COG4926	Phage-related protein	NA
UHGV-0177370_35	Structural annotation	PF14594, PF03422, PF00629, PF13157, PF03211, TIGR01665, NF040827, COG4926	NA	NA
UHGV-0177370_36	Structural annotation	PF16640	NA	NA
UHGV-0177370_38	PHROG	phrog_1493	endolysin	lysis
UHGV-0177370_38	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0177370_38	eggNOG-mapper	1246484.D479_19733	Ami_3	NA
UHGV-0177370_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0177370_38	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0177370_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177370_38	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0177370_39	PHROG	phrog_4105	NA	unknown function
UHGV-0177370_39	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0177370_39	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0177370_40	eggNOG-mapper	588581.Cpap_3400	NA	NA
UHGV-0177370_41	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0177370_43	PHROG	phrog_16490	NA	unknown function
UHGV-0177370_43	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0177370_44	PHROG	phrog_20016	NA	unknown function
UHGV-0177370_44	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0177370_46	KOfam	K14059	int; integrase	NA
UHGV-0177370_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0177370_46	UniRef90	UniRef90_A0A1Y3SS19	Tyr recombinase domain-containing protein	NA
UHGV-0177370_46	eggNOG-mapper	398512.JQKC01000018_gene2989	Phage integrase family	NA
UHGV-0177370_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177370_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0177370_46	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0177370_59	PHROG	phrog_6721	NA	unknown function
UHGV-0177370_59	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0177370_59	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0177370_65	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0177370_69	PHROG	phrog_2152	NA	unknown function
UHGV-0177370_69	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0177370_69	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0177370_69	Pfam	PF19880	NA	DUF6353
UHGV-0177370_69	Structural annotation	PF19880	NA	NA
UHGV-0177370_72	PHROG	phrog_7539	NA	unknown function
UHGV-0177370_73	PHROG	phrog_4079	NA	unknown function
UHGV-0177370_73	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0177370_75	PHROG	phrog_2152	NA	unknown function
UHGV-0177370_75	UniRef90	UniRef90_D4P7I0	Gp069	NA
UHGV-0177370_75	eggNOG-mapper	691965.D4P7I0_9CAUD	NA	NA
UHGV-0177370_75	Pfam	PF19880	NA	DUF6353
UHGV-0177370_76	PHROG	phrog_4695	NA	unknown function
UHGV-0177370_77	PHROG	phrog_4678	NA	unknown function
UHGV-0177370_77	eggNOG-mapper	428125.CLOLEP_01372	NA	NA
UHGV-0177370_80	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0177370_80	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0177370_80	UniRef90	UniRef90_A0A3C2CH81	NA	NA
UHGV-0177370_80	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0177370_80	Pfam	PF19263	NA	DUF5906
UHGV-0177370_80	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0177370_80	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA