UHGV-0177423

Genome information

Genome length 39,745 bps

CDS count 64

Completeness 98.24% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177423
vOTU ID	vOTU-060586
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585526
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.57
Jumbo phage	No

Genome content
Genome length	39,745 bps
GC content	52.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.69%
Average CDS length	561.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177423_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177423_2	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0177423_2	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0177423_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177423_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177423_5	Structural annotation	PF04545	NA	NA
UHGV-0177423_6	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177423_6	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177423_6	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0177423_6	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0177423_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177423_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177423_6	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0177423_7	PHROG	phrog_16725	NA	unknown function
UHGV-0177423_8	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0177423_8	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177423_8	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0177423_8	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0177423_8	Pfam	PF13614	AAA domain	AAA_31
UHGV-0177423_8	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0177423_8	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0177423_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177423_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177423_10	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0177423_10	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0177423_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177423_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177423_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177423_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177423_10	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0177423_11	PHROG	phrog_7566	NA	unknown function
UHGV-0177423_11	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0177423_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177423_14	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0177423_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177423_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0177423_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0177423_18	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0177423_18	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0177423_19	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0177423_19	PHROG	phrog_200	lipoprotein	other
UHGV-0177423_19	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0177423_19	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0177423_19	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0177423_19	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0177423_19	Structural annotation	PF01145, TIGR01933, COG0330	NA	NA
UHGV-0177423_20	PHROG	phrog_200	lipoprotein	other
UHGV-0177423_20	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0177423_20	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0177423_27	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0177423_27	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0177423_28	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0177423_28	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0177423_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0177423_30	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0177423_31	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0177423_31	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0177423_31	UniRef90	UniRef90_A0A1C6JSH3	DNA polymerase III polC-type	NA
UHGV-0177423_31	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0177423_31	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0177423_31	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0177423_31	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0177423_31	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0177423_31	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0177423_35	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0177423_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177423_35	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177423_36	KOfam	K14059	int; integrase	NA
UHGV-0177423_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0177423_36	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0177423_36	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0177423_36	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0177423_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177423_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177423_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177423_37	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0177423_38	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0177423_39	PHROG	phrog_16490	NA	unknown function
UHGV-0177423_39	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177423_44	PHROG	phrog_918	NA	unknown function
UHGV-0177423_44	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0177423_44	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0177423_44	Pfam	PF19791	NA	DUF6275
UHGV-0177423_44	Structural annotation	PF19791	NA	NA
UHGV-0177423_45	PHROG	phrog_263	holin	lysis
UHGV-0177423_45	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-0177423_45	eggNOG-mapper	411483.FAEPRAA2165_00003	SPP1 phage holin	NA
UHGV-0177423_45	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0177423_45	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0177423_45	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0177423_46	PHROG	phrog_4105	NA	unknown function
UHGV-0177423_46	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0177423_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0177423_47	PHROG	phrog_291	endolysin	lysis
UHGV-0177423_47	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0177423_47	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0177423_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177423_47	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0177423_47	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0177423_48	PHROG	phrog_11541	NA	unknown function
UHGV-0177423_48	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0177423_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0177423_50	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0177423_50	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0177423_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177423_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177423_50	COG	COG4926	Phage-related protein	NA
UHGV-0177423_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177423_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177423_51	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0177423_51	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0177423_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177423_51	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0177423_52	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0177423_52	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0177423_52	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0177423_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0177423_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0177423_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0177423_52	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0177423_55	PHROG	phrog_88	major tail protein	tail
UHGV-0177423_55	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0177423_55	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0177423_55	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0177423_55	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0177423_56	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177423_56	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0177423_56	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0177423_56	Structural annotation	TIGR01725	NA	NA
UHGV-0177423_57	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0177423_57	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0177423_58	PHROG	phrog_19734	NA	unknown function
UHGV-0177423_58	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0177423_58	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177423_59	PHROG	phrog_749	NA	unknown function
UHGV-0177423_59	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0177423_60	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177423_60	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0177423_60	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0177423_60	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177423_60	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0177423_60	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177423_60	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177423_60	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177423_61	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0177423_61	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0177423_61	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0177423_61	eggNOG-mapper	1121866.AUGK01000006_gene879	Clp protease	NA
UHGV-0177423_61	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0177423_61	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0177423_61	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0177423_62	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177423_62	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0177423_62	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0177423_62	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177423_62	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177423_62	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177423_62	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177423_63	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177423_63	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0177423_63	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0177423_63	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177423_63	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177423_63	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177423_64	PHROG	phrog_13845	NA	unknown function
UHGV-0177423_64	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0177423_64	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177423_64	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA