UHGV-0177429

Genome information

Genome length 40,027 bps

CDS count 70

Completeness 94.96% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177429
vOTU ID	vOTU-066000
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585523
BioSample	SAMN09781789
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.58
Jumbo phage	No

Genome content
Genome length	40,027 bps
GC content	55.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.83%
Average CDS length	522.86 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177429_2	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0177429_2	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0177429_2	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0177429_2	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0177429_2	Structural annotation	PF16677	NA	NA
UHGV-0177429_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177429_3	PHROG	phrog_10250	NA	unknown function
UHGV-0177429_3	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0177429_3	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0177429_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177429_3	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0177429_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177429_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177429_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177429_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0177429_4	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0177429_4	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0177429_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177429_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0177429_5	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0177429_5	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0177429_5	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0177429_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0177429_5	COG	COG2369	NA	NA
UHGV-0177429_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0177429_7	PHROG	phrog_8680	NA	unknown function
UHGV-0177429_7	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0177429_7	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0177429_7	Pfam	PF14386	NA	DUF4417
UHGV-0177429_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177429_7	Structural annotation	PF14386	NA	NA
UHGV-0177429_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177429_9	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0177429_9	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0177429_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177429_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0177429_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177429_12	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0177429_12	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0177429_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0177429_14	PHROG	phrog_17977	NA	unknown function
UHGV-0177429_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177429_15	Structural annotation	PF13554	NA	NA
UHGV-0177429_16	PHROG	phrog_885	major tail protein	tail
UHGV-0177429_16	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0177429_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0177429_19	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0177429_19	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0177429_19	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0177429_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0177429_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0177429_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0177429_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0177429_20	PHROG	phrog_3558	tail protein	tail
UHGV-0177429_20	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0177429_20	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0177429_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177429_20	COG	COG4926	Phage-related protein	NA
UHGV-0177429_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177429_21	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0177429_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177429_21	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0177429_23	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0177429_23	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0177429_23	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0177429_23	Pfam	PF19789	NA	DUF6273
UHGV-0177429_23	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0177429_24	PHROG	phrog_29248	NA	unknown function
UHGV-0177429_25	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0177429_25	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0177429_25	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0177429_25	Structural annotation	PF09693	NA	NA
UHGV-0177429_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0177429_26	PHROG	phrog_291	endolysin	lysis
UHGV-0177429_26	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0177429_26	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0177429_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177429_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0177429_26	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0177429_28	PHROG	phrog_15303	NA	unknown function
UHGV-0177429_30	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0177429_31	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0177429_31	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0177429_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177429_31	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-0177429_31	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0177429_33	PHROG	phrog_3754	NA	unknown function
UHGV-0177429_33	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0177429_34	PHROG	phrog_21718	NA	unknown function
UHGV-0177429_34	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177429_35	PHROG	phrog_22984	NA	unknown function
UHGV-0177429_36	PHROG	phrog_16490	NA	unknown function
UHGV-0177429_36	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0177429_38	PHROG	phrog_20016	NA	unknown function
UHGV-0177429_38	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177429_38	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0177429_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177429_39	Structural annotation	PF12510	NA	NA
UHGV-0177429_41	KOfam	K14059	int; integrase	NA
UHGV-0177429_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0177429_41	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0177429_41	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0177429_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177429_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0177429_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0177429_42	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0177429_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177429_42	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0177429_45	PHROG	phrog_888	NA	unknown function
UHGV-0177429_45	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0177429_45	eggNOG-mapper	1292035.H476_2311	Short C-terminal domain	NA
UHGV-0177429_45	Pfam	PF14471	NA	DUF4428
UHGV-0177429_45	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0177429_45	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0177429_48	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0177429_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177429_49	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0177429_49	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0177429_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177429_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177429_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177429_50	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0177429_50	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0177429_50	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0177429_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177429_50	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0177429_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0177429_50	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0177429_51	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0177429_51	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0177429_52	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0177429_56	Structural annotation	PF06718	NA	NA
UHGV-0177429_58	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177429_58	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0177429_58	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0177429_58	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0177429_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177429_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177429_59	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0177429_59	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0177429_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177429_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177429_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177429_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177429_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177429_60	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0177429_60	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177429_60	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0177429_60	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0177429_60	Pfam	PF19808	NA	DUF6291
UHGV-0177429_60	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0177429_60	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0177429_60	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0177429_61	Structural annotation	PF11417	NA	NA
UHGV-0177429_62	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0177429_63	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0177429_65	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0177429_65	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0177429_65	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0177429_65	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177429_65	Structural annotation	PF04445, MF_00341, TIGR00537, COG0270	NA	NA
UHGV-0177429_67	PHROG	phrog_3136	NA	unknown function
UHGV-0177429_67	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0177429_67	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0177429_67	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0177429_67	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0177429_68	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177429_68	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177429_68	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177429_68	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0177429_68	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177429_68	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177429_68	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177429_69	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0177429_69	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0177429_69	UniRef90	UniRef90_A0A329TJ90	DNA methyltransferase	NA
UHGV-0177429_69	eggNOG-mapper	1235798.C817_04106	Belongs to the MT-A70-like family	NA
UHGV-0177429_69	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0177429_69	Pfam	PF05063	MT-A70	MT-A70
UHGV-0177429_69	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0177429_69	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0177429_70	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177429_70	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA