UHGV-0177430

Genome information

Genome length 40,164 bps

CDS count 69

Completeness 90.21% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177430
vOTU ID	vOTU-068864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585522
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.83
Jumbo phage	No

Genome content
Genome length	40,164 bps
GC content	53.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.35%
Average CDS length	536.30 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177430_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0177430_4	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0177430_4	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0177430_4	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0177430_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177430_5	PHROG	phrog_1794	amidase	lysis
UHGV-0177430_5	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177430_5	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0177430_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0177430_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177430_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0177430_6	PHROG	phrog_13256	NA	unknown function
UHGV-0177430_6	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0177430_8	PHROG	phrog_937	hemolysin	other
UHGV-0177430_8	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0177430_9	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0177430_9	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0177430_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177430_9	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0177430_9	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0177430_13	PHROG	phrog_32308	NA	unknown function
UHGV-0177430_13	eggNOG-mapper	1122918.KB907248_gene4487	NA	NA
UHGV-0177430_13	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0177430_14	PHROG	phrog_1194	NA	unknown function
UHGV-0177430_14	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0177430_14	Pfam	PF20458	NA	DUF6711
UHGV-0177430_14	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0177430_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177430_15	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0177430_15	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0177430_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0177430_16	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0177430_17	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0177430_18	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0177430_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0177430_19	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0177430_20	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0177430_21	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0177430_22	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0177430_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0177430_22	Structural annotation	TIGR01560	NA	NA
UHGV-0177430_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177430_23	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0177430_23	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177430_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0177430_26	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0177430_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0177430_26	COG	COG2369	NA	NA
UHGV-0177430_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0177430_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0177430_27	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0177430_27	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177430_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177430_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177430_29	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0177430_29	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0177430_29	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0177430_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0177430_29	COG	COG5410	NA	NA
UHGV-0177430_29	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0177430_31	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0177430_31	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0177430_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0177430_32	PHROG	phrog_33872	NA	unknown function
UHGV-0177430_32	eggNOG-mapper	1007096.BAGW01000023_gene158	NA	NA
UHGV-0177430_33	Structural annotation	PF10723	NA	NA
UHGV-0177430_35	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0177430_35	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177430_35	UniRef90	UniRef90_A0A3D3Y6X7	FtsK domain-containing protein	NA
UHGV-0177430_35	eggNOG-mapper	859653.HIMB5_00013920	DNA segregation ATPase FtsK SpoIIIE	NA
UHGV-0177430_35	PADLOC	SspH_00004	SspH	SSP
UHGV-0177430_35	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0177430_35	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0177430_35	Structural annotation	PF01580, MF_00350, TIGR03925, COG4128	NA	NA
UHGV-0177430_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177430_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0177430_36	UniRef90	UniRef90_UPI0006824F34	phage antirepressor KilAC domain-containing protein	NA
UHGV-0177430_36	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0177430_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177430_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177430_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0177430_36	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0177430_38	UniRef90	UniRef90_A0A1M2ZNM7	CopG family transcriptional regulator	NA
UHGV-0177430_38	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0177430_38	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0177430_39	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177430_39	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0177430_39	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0177430_40	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0177430_41	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0177430_41	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0177430_42	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-0177430_42	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0177430_43	PHROG	phrog_31240	NA	unknown function
UHGV-0177430_43	UniRef90	UniRef90_A0A3B9SFD4	DNA methylase N-4 (Fragment)	NA
UHGV-0177430_43	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0177430_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0177430_45	eggNOG-mapper	1415774.U728_858	NA	NA
UHGV-0177430_48	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177430_48	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-0177430_48	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177430_48	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0177430_48	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0177430_48	COG	COG1405	Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB	NA
UHGV-0177430_48	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0177430_49	PHROG	phrog_31029	NA	unknown function
UHGV-0177430_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177430_52	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0177430_52	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0177430_52	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0177430_52	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0177430_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177430_52	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177430_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177430_52	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0177430_54	Structural annotation	PF05082	NA	NA
UHGV-0177430_56	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0177430_56	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0177430_59	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0177430_59	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0177430_60	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177430_60	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0177430_60	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0177430_61	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177430_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177430_61	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0177430_61	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0177430_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177430_61	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177430_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177430_61	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177430_61	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177430_62	PHROG	phrog_1029	NA	unknown function
UHGV-0177430_62	UniRef90	UniRef90_A0A0U3EGQ0	Phage-related protein	NA
UHGV-0177430_62	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0177430_62	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0177430_63	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0177430_63	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0177430_63	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0177430_64	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0177430_64	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0177430_64	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177430_65	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177430_65	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0177430_65	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177430_65	Structural annotation	PF05772	NA	NA
UHGV-0177430_66	PHROG	phrog_14970	NA	unknown function
UHGV-0177430_66	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0177430_66	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0177430_66	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0177430_66	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0177430_69	PHROG	phrog_27197	NA	unknown function
UHGV-0177430_69	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0177430_69	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0177430_69	Structural annotation	NF007410	NA	NA