UHGV-0177471

Genome information

vOTU vOTU-019758

Genome length 27,352 bps

CDS count 56

Completeness 70.63% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177471
vOTU ID	vOTU-019758
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_570568
BioSample	SAMN06348163
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.94
Jumbo phage	No

Genome content
Genome length	27,352 bps
GC content	42.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	83.76%
Average CDS length	413.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177471_1	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0177471_1	eggNOG-mapper	665956.HMPREF1032_03076	NA	NA
UHGV-0177471_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177471_2	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_2	UniRef90	UniRef90_A0A7H9CR91	ParB N-terminal domain-containing protein	NA
UHGV-0177471_2	eggNOG-mapper	1423724.BAMM01000023_gene1920	DNA methylase	NA
UHGV-0177471_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177471_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177471_2	COG	COG0863	DNA modification methylase	NA
UHGV-0177471_2	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0177471_4	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0177471_4	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0177471_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0177471_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177471_9	UniRef90	UniRef90_A0A3C1I761	HTH cro/C1-type domain-containing protein	NA
UHGV-0177471_9	eggNOG-mapper	1545701.LACWKB10_1161	Transcriptional regulator	NA
UHGV-0177471_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177471_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177471_10	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0177471_10	UniRef90	UniRef90_A0A508YPA6	Methyltransf_11 domain-containing protein	NA
UHGV-0177471_10	eggNOG-mapper	1423814.HMPREF0549_0160	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0177471_10	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0177471_10	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0177471_10	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0177471_10	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0177471_10	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0177471_11	Structural annotation	PF17399	NA	NA
UHGV-0177471_13	Structural annotation	PF19678, COG2388	NA	NA
UHGV-0177471_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177471_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177471_14	UniRef90	UniRef90_A0A1H0C6I9	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0177471_14	eggNOG-mapper	349123.Lreu23DRAFT_3099	Endodeoxyribonuclease RusA	NA
UHGV-0177471_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177471_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177471_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177471_15	Structural annotation	PF00684	NA	NA
UHGV-0177471_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177471_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177471_16	UniRef90	UniRef90_A0A0R1P1H3	AAA domain-containing protein	NA
UHGV-0177471_16	eggNOG-mapper	1423724.BAMM01000012_gene1381	IstB-like ATP binding protein	NA
UHGV-0177471_16	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0177471_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0177471_16	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0177471_17	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_17	UniRef90	UniRef90_UPI00130E0155	conserved phage C-terminal domain-containing protein	NA
UHGV-0177471_17	eggNOG-mapper	1423814.HMPREF0549_1765	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0177471_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177471_17	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0177471_17	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0177471_17	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0177471_17	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0177471_18	PHROG	phrog_398	NA	unknown function
UHGV-0177471_18	UniRef90	UniRef90_UPI0006527DDD	putative HNHc nuclease	NA
UHGV-0177471_18	eggNOG-mapper	1203076.CAKF01000007_gene281	Putative HNHc nuclease	NA
UHGV-0177471_18	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0177471_18	Structural annotation	PF16784	NA	NA
UHGV-0177471_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177471_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_19	UniRef90	UniRef90_A0A7H9CM98	Single-stranded DNA-binding protein	NA
UHGV-0177471_19	eggNOG-mapper	1395587.P364_0114205	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0177471_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177471_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177471_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177471_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177471_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0177471_20	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_20	UniRef90	UniRef90_A0A7H9CQ11	NA	NA
UHGV-0177471_20	eggNOG-mapper	363555.Q20DG2_9CAUD	NA	NA
UHGV-0177471_20	Pfam	PF06378	NA	DUF1071
UHGV-0177471_20	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0177471_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0177471_21	UniRef90	UniRef90_A0A7H9CRB0	Siphovirus Gp157 family protein	NA
UHGV-0177471_21	eggNOG-mapper	598467.BrE312_2727	Siphovirus Gp157	NA
UHGV-0177471_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0177471_21	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0177471_25	PHROG	phrog_823	NA	unknown function
UHGV-0177471_25	UniRef90	UniRef90_UPI0002503D73	NA	NA
UHGV-0177471_25	eggNOG-mapper	1423758.BN55_01550	NA	NA
UHGV-0177471_25	Pfam	PF05595	NA	DUF771
UHGV-0177471_25	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0177471_27	PHROG	phrog_6329	NA	unknown function
UHGV-0177471_27	eggNOG-mapper	1423732.BALS01000058_gene2819	NA	NA
UHGV-0177471_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177471_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0177471_28	UniRef90	UniRef90_A0A099YDX3	Oxidoreductase	NA
UHGV-0177471_28	eggNOG-mapper	1423807.BACO01000085_gene2467	AntA/AntB antirepressor	NA
UHGV-0177471_28	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0177471_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177471_28	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0177471_28	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0177471_29	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0177471_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177471_29	UniRef90	UniRef90_A0A1L7GTP0	HTH cro/C1-type domain-containing protein	NA
UHGV-0177471_29	eggNOG-mapper	1260356.D920_01619	Protein conserved in bacteria	NA
UHGV-0177471_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177471_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177471_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177471_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177471_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177471_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177471_30	UniRef90	UniRef90_A0A1L7GTS1	HTH cro/C1-type domain-containing protein	NA
UHGV-0177471_30	eggNOG-mapper	557436.Lreu_0801	Helix-turn-helix domain	NA
UHGV-0177471_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177471_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177471_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177471_30	Structural annotation	PF12844, MF_00535, NF041575, COG1396	NA	NA
UHGV-0177471_31	PHROG	phrog_87	metallo-protease	other
UHGV-0177471_31	UniRef90	UniRef90_A0A7H9CPT6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0177471_31	eggNOG-mapper	1201292.DR75_1543	IrrE N-terminal-like domain	NA
UHGV-0177471_31	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0177471_31	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0177471_32	PHROG	phrog_27138	NA	unknown function
UHGV-0177471_32	eggNOG-mapper	1231336.L248_2110	NA	NA
UHGV-0177471_33	UniRef90	UniRef90_A0A4Q2AYJ9	DNA-packaging protein	NA
UHGV-0177471_34	KOfam	K14059	int; integrase	NA
UHGV-0177471_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0177471_34	UniRef90	UniRef90_A0A0R1NRN4	Tyr recombinase domain-containing protein	NA
UHGV-0177471_34	eggNOG-mapper	334390.LAF_0460	Belongs to the 'phage' integrase family	NA
UHGV-0177471_34	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0177471_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0177471_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177471_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177471_34	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0177471_35	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0177471_35	UniRef90	UniRef90_UPI0013145DF6	NA	NA
UHGV-0177471_35	eggNOG-mapper	257314.LJ_0303	NA	NA
UHGV-0177471_35	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0177471_35	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0177471_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177471_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177471_37	UniRef90	UniRef90_A0A3C1IAB9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177471_37	eggNOG-mapper	1423814.HMPREF0549_1770	Endodeoxyribonuclease RusA	NA
UHGV-0177471_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177471_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177471_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177471_38	PHROG	phrog_918	NA	unknown function
UHGV-0177471_38	UniRef90	UniRef90_UPI000D30FBBF	NA	NA
UHGV-0177471_38	eggNOG-mapper	1567484.A0A0A7NTZ5_9CAUD	NA	NA
UHGV-0177471_38	Pfam	PF19791	NA	DUF6275
UHGV-0177471_40	UniRef90	UniRef90_A0A508YP97	NA	NA
UHGV-0177471_41	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_41	UniRef90	UniRef90_A0A3C1IC39	DnaB_2 domain-containing protein	NA
UHGV-0177471_41	eggNOG-mapper	349123.Lreu23DRAFT_4020	NA	NA
UHGV-0177471_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177471_41	Structural annotation	NF040939, COG3611	NA	NA
UHGV-0177471_42	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177471_42	UniRef90	UniRef90_A0A3C1IB43	NA	NA
UHGV-0177471_42	eggNOG-mapper	947980.E9LUM4_9CAUD	NA	NA
UHGV-0177471_42	Pfam	PF12684	NA	DUF3799
UHGV-0177471_42	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0177471_43	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0177471_43	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177471_43	UniRef90	UniRef90_A0A3C1IAN3	Recombinase RecT	NA
UHGV-0177471_43	eggNOG-mapper	334390.LAF_0667	RecT family	NA
UHGV-0177471_43	Pfam	PF03837	RecT family	RecT
UHGV-0177471_43	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0177471_43	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0177471_43	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0177471_47	eggNOG-mapper	334390.LAF_0665	NA	NA
UHGV-0177471_48	PHROG	phrog_3220	NA	unknown function
UHGV-0177471_48	UniRef90	UniRef90_UPI0010F73B8B	NA	NA
UHGV-0177471_48	eggNOG-mapper	334390.LAF_0664	NA	NA
UHGV-0177471_48	Pfam	PF09954	NA	DUF2188
UHGV-0177471_48	Structural annotation	PF09954	NA	NA
UHGV-0177471_49	PHROG	phrog_3150	NA	unknown function
UHGV-0177471_49	eggNOG-mapper	334390.LAF_0663	NA	NA
UHGV-0177471_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0177471_53	PHROG	phrog_585	NA	unknown function
UHGV-0177471_53	UniRef90	UniRef90_A0A514XRE8	NA	NA
UHGV-0177471_53	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-0177471_53	Pfam	PF10711	NA	DUF2513
UHGV-0177471_53	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0177471_55	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0177471_55	UniRef90	UniRef90_A0A1G9YRJ6	Phage regulatory protein, rha family	NA
UHGV-0177471_55	eggNOG-mapper	334390.LAF_0661	Phage regulatory protein	NA
UHGV-0177471_55	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0177471_55	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0177471_55	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0177471_55	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0177471_56	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0177471_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177471_56	UniRef90	UniRef90_UPI00195C2008	helix-turn-helix domain-containing protein	NA
UHGV-0177471_56	eggNOG-mapper	1423755.BAML01000004_gene409	Helix-turn-helix domain	NA
UHGV-0177471_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177471_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177471_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177471_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA