UHGV-0177477

Genome information

Genome length 31,013 bps

CDS count 45

Completeness 90.96% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177477
vOTU ID	vOTU-062551
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587043
BioSample	SAMN09781787
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.4
Jumbo phage	No

Genome content
Genome length	31,013 bps
GC content	59.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.70%
Average CDS length	643.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177477_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0177477_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0177477_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177477_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177477_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177477_2	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0177477_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0177477_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177477_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177477_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177477_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177477_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177477_3	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0177477_3	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0177477_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177477_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177477_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177477_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177477_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0177477_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0177477_4	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0177477_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0177477_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0177477_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0177477_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0177477_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177477_5	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0177477_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0177477_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177477_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0177477_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177477_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177477_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177477_6	PHROG	phrog_749	NA	unknown function
UHGV-0177477_6	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0177477_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0177477_7	PHROG	phrog_19734	NA	unknown function
UHGV-0177477_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0177477_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0177477_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177477_8	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0177477_8	Structural annotation	PF05657	NA	NA
UHGV-0177477_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177477_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0177477_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0177477_9	Structural annotation	TIGR01725	NA	NA
UHGV-0177477_10	PHROG	phrog_88	major tail protein	tail
UHGV-0177477_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0177477_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0177477_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0177477_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0177477_13	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0177477_13	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0177477_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0177477_13	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0177477_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177477_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0177477_14	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0177477_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177477_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0177477_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0177477_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0177477_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0177477_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177477_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177477_15	COG	COG4926	Phage-related protein	NA
UHGV-0177477_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177477_16	eggNOG-mapper	1121097.JCM15093_1942	Leucine-rich repeat (LRR) protein	NA
UHGV-0177477_16	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0177477_16	Structural annotation	PF10651	NA	NA
UHGV-0177477_17	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0177477_17	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0177477_17	eggNOG-mapper	4922.CAY69141	Saccharomyces cerevisiae YDL057w	NA
UHGV-0177477_17	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0177477_17	COG	COG1073	NA	NA
UHGV-0177477_18	PHROG	phrog_199	holin	lysis
UHGV-0177477_18	UniRef90	UniRef90_R6DA24	Toxin secretion/phage lysis holin	NA
UHGV-0177477_18	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0177477_18	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0177477_18	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0177477_18	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0177477_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0177477_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177477_19	PHROG	phrog_1493	endolysin	lysis
UHGV-0177477_19	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0177477_19	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0177477_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0177477_19	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0177477_19	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0177477_19	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0177477_20	KOfam	K14059	int; integrase	NA
UHGV-0177477_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0177477_20	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0177477_20	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0177477_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177477_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177477_20	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0177477_21	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0177477_23	eggNOG-mapper	1226325.HMPREF1548_05412	Peptidoglycan-binding domain 1 protein	NA
UHGV-0177477_23	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0177477_24	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0177477_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177477_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177477_24	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0177477_26	Structural annotation	PF14947, NF041230, COG3432	NA	NA
UHGV-0177477_27	UniRef90	UniRef90_A0A3A8W4L6	XRE family transcriptional regulator	NA
UHGV-0177477_27	eggNOG-mapper	397291.C804_05807	sequence-specific DNA binding	NA
UHGV-0177477_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177477_27	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0177477_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177477_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177477_28	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0177477_28	eggNOG-mapper	445975.COLSTE_01137	Peptidase S24-like	NA
UHGV-0177477_28	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177477_28	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0177477_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177477_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177477_29	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0177477_29	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0177477_29	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177477_29	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177477_29	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0177477_29	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0177477_32	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177477_32	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0177477_32	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0177477_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177477_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177477_32	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0177477_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0177477_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0177477_33	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0177477_33	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0177477_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0177477_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0177477_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0177477_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0177477_34	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0177477_34	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177477_34	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0177477_34	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0177477_34	Pfam	PF13614	AAA domain	AAA_31
UHGV-0177477_34	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0177477_34	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0177477_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177477_35	PHROG	phrog_27290	NA	unknown function
UHGV-0177477_35	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0177477_35	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0177477_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177477_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177477_35	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0177477_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177477_44	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0177477_44	Structural annotation	PF21578, NF041486	NA	NA