UHGV-0177481

Genome information

Genome length 42,743 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177481
vOTU ID	vOTU-046622
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593244
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8
Jumbo phage	No

Genome content
Genome length	42,743 bps
GC content	38.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	93.44%
Average CDS length	607.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177481_3	PHROG	phrog_6721	NA	unknown function
UHGV-0177481_3	eggNOG-mapper	411473.RUMCAL_00916	NA	NA
UHGV-0177481_3	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0177481_4	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0177481_4	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0177481_6	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0177481_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177481_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0177481_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0177481_7	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0177481_8	KOfam	K19117	csd1, cas8c; CRISPR-associated protein Csd1	NA
UHGV-0177481_8	UniRef90	UniRef90_UPI001570630B	type I-C CRISPR-associated protein Cas8c/Csd1	NA
UHGV-0177481_8	eggNOG-mapper	908340.HMPREF9406_4016	CRISPR-associated protein, Csd1 family	NA
UHGV-0177481_8	PADLOC	cd09757	CAS-I-C; effector_LS	CRISPR-CAS
UHGV-0177481_8	Pfam	PF09709	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
UHGV-0177481_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0177481_8	Structural annotation	PF09709, TIGR01863	NA	NA
UHGV-0177481_10	Structural annotation	PF17917	NA	NA
UHGV-0177481_11	PHROG	phrog_15863	NA	unknown function
UHGV-0177481_11	UniRef90	UniRef90_A0A417HVZ9	J domain-containing protein	NA
UHGV-0177481_11	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0177481_11	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0177481_12	eggNOG-mapper	742733.HMPREF9469_04867	NA	NA
UHGV-0177481_14	UniRef90	UniRef90_R7DAZ8	Arc-like DNA-binding protein	NA
UHGV-0177481_14	Pfam	PF05534	HicB family	HicB
UHGV-0177481_14	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0177481_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0177481_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0177481_15	UniRef90	UniRef90_UPI00045EAA25	terminase small subunit	NA
UHGV-0177481_15	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0177481_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177481_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0177481_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0177481_16	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0177481_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177481_16	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-0177481_16	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0177481_16	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0177481_16	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177481_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177481_17	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0177481_17	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0177481_19	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0177481_20	PHROG	phrog_24113	NA	unknown function
UHGV-0177481_20	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0177481_21	PHROG	phrog_371	major head protein	head and packaging
UHGV-0177481_21	UniRef90	UniRef90_UPI001C11985C	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0177481_21	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0177481_21	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0177481_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177481_22	PHROG	phrog_13046	NA	unknown function
UHGV-0177481_22	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0177481_22	Structural annotation	PF20387	NA	NA
UHGV-0177481_23	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0177481_23	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0177481_24	PHROG	phrog_32680	tail fiber protein	tail
UHGV-0177481_27	PHROG	phrog_2310	NA	unknown function
UHGV-0177481_27	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-0177481_29	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-0177481_30	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0177481_31	PHROG	phrog_1863	NA	unknown function
UHGV-0177481_31	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0177481_32	PHROG	phrog_1129	holin	lysis
UHGV-0177481_32	UniRef90	UniRef90_UPI001C1096AE	phage holin family protein	NA
UHGV-0177481_32	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0177481_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0177481_32	Structural annotation	PF06946	NA	NA
UHGV-0177481_33	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0177481_33	PHROG	phrog_6523	endolysin	lysis
UHGV-0177481_33	UniRef90	UniRef90_F2JNY6	Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	NA
UHGV-0177481_33	eggNOG-mapper	642492.Clole_1880	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0177481_33	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0177481_33	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0177481_33	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0177481_34	Structural annotation	PF09486, NF038305	NA	NA
UHGV-0177481_35	PHROG	phrog_9854	NA	unknown function
UHGV-0177481_35	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0177481_35	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0177481_35	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0177481_35	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0177481_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0177481_36	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0177481_39	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0177481_40	KOfam	K14059	int; integrase	NA
UHGV-0177481_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0177481_40	UniRef90	UniRef90_UPI001C109D33	site-specific integrase	NA
UHGV-0177481_40	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-0177481_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177481_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177481_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0177481_41	eggNOG-mapper	411471.SUBVAR_05869	repeat protein	NA
UHGV-0177481_41	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0177481_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0177481_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0177481_44	UniRef90	UniRef90_UPI0015933ACD	helix-turn-helix domain-containing protein	NA
UHGV-0177481_44	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0177481_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177481_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177481_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177481_50	eggNOG-mapper	411461.DORFOR_00023	NA	NA
UHGV-0177481_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0177481_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0177481_52	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0177481_52	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0177481_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177481_52	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0177481_58	PHROG	phrog_11717	NA	unknown function
UHGV-0177481_58	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0177481_58	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0177481_59	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177481_59	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0177481_59	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177481_59	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177481_60	PHROG	phrog_7566	NA	unknown function
UHGV-0177481_60	eggNOG-mapper	1443125.Z962_p0035	endonuclease activity	NA
UHGV-0177481_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177481_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177481_61	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177481_61	UniRef90	UniRef90_A0A136WJ13	Endodeoxyribonuclease RusA	NA
UHGV-0177481_61	eggNOG-mapper	588581.Cpap_1486	Endodeoxyribonuclease RusA	NA
UHGV-0177481_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177481_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177481_61	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177481_62	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177481_62	UniRef90	UniRef90_A0A350TWM2	NA	NA
UHGV-0177481_62	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0177481_62	Pfam	PF19808	NA	DUF6291
UHGV-0177481_62	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177481_63	PHROG	phrog_9804	NA	unknown function
UHGV-0177481_63	UniRef90	UniRef90_R6M669	Inhibitor_G39P domain-containing protein	NA
UHGV-0177481_63	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0177481_63	AcrCatalog	cluster_137185	NA	NA
UHGV-0177481_63	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0177481_63	Structural annotation	PF11417	NA	NA
UHGV-0177481_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177481_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177481_64	UniRef90	UniRef90_A0A2V2C1N3	Single-stranded DNA-binding protein	NA
UHGV-0177481_64	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0177481_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177481_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177481_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177481_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177481_64	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0177481_66	PHROG	phrog_14105	NA	unknown function
UHGV-0177481_66	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0177481_66	COG	COG5164	Transcription elongation factor SPT5	NA