UHGV-0177484

Genome information

Genome length 38,963 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177484
vOTU ID	vOTU-046624
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593249
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.32
Jumbo phage	No

Genome content
Genome length	38,963 bps
GC content	56.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.71%
Average CDS length	584.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177484_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177484_1	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0177484_1	UniRef90	UniRef90_A0A1C6BD43	Phage anti-repressor protein	NA
UHGV-0177484_1	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0177484_1	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0177484_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0177484_1	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0177484_3	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0177484_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177484_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0177484_4	UniRef90	UniRef90_A0A1Y3XM94	HTH cro/C1-type domain-containing protein	NA
UHGV-0177484_4	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177484_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177484_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177484_6	KOfam	K14059	int; integrase	NA
UHGV-0177484_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0177484_6	UniRef90	UniRef90_A0A4D7AYG4	Site-specific integrase	NA
UHGV-0177484_6	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0177484_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177484_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177484_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177484_7	Structural annotation	PF17917	NA	NA
UHGV-0177484_10	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177484_10	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0177484_10	AcrCatalog	cluster_5564	NA	NA
UHGV-0177484_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0177484_11	PHROG	phrog_15863	NA	unknown function
UHGV-0177484_11	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0177484_11	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0177484_11	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0177484_11	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0177484_13	eggNOG-mapper	693746.OBV_01760	NA	NA
UHGV-0177484_15	eggNOG-mapper	693746.OBV_01750	NA	NA
UHGV-0177484_17	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0177484_17	Structural annotation	PF11650	NA	NA
UHGV-0177484_18	UniRef90	UniRef90_A0A4D7B2L2	Cysteine-rich KTR domain-containing protein	NA
UHGV-0177484_18	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0177484_18	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0177484_19	PHROG	phrog_872	NA	unknown function
UHGV-0177484_19	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0177484_19	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0177484_19	Pfam	PF11195	NA	DUF2829
UHGV-0177484_19	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0177484_19	Structural annotation	PF11195	NA	NA
UHGV-0177484_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0177484_21	UniRef90	UniRef90_K1TJJ5	Gp7 (Fragment)	NA
UHGV-0177484_21	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0177484_21	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0177484_21	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177484_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177484_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0177484_22	UniRef90	UniRef90_K1SF61	Terminase-like protein (Fragment)	NA
UHGV-0177484_22	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0177484_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177484_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177484_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177484_23	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0177484_23	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0177484_23	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0177484_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177484_24	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0177484_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177484_25	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0177484_27	PHROG	phrog_199	holin	lysis
UHGV-0177484_27	UniRef90	UniRef90_K1UL76	Holin, toxin secretion/phage lysis	NA
UHGV-0177484_27	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-0177484_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0177484_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0177484_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0177484_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0177484_28	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0177484_28	PHROG	phrog_18955	NA	unknown function
UHGV-0177484_28	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0177484_28	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0177484_28	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0177484_28	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0177484_28	COG	COG3108	NA	NA
UHGV-0177484_28	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0177484_29	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0177484_30	UniRef90	UniRef90_A0A2U1CD16	PBECR3 domain-containing protein	NA
UHGV-0177484_30	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0177484_30	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0177484_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177484_31	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0177484_31	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0177484_31	eggNOG-mapper	445971.ANASTE_00714	BRO family, N-terminal domain	NA
UHGV-0177484_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177484_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177484_31	COG	COG3617	Prophage antirepressor	NA
UHGV-0177484_31	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0177484_37	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0177484_37	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0177484_38	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0177484_38	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0177484_38	eggNOG-mapper	1122917.KB899661_gene912	Putative sugar diacid recognition	NA
UHGV-0177484_38	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0177484_38	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0177484_38	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0177484_40	PHROG	phrog_3136	NA	unknown function
UHGV-0177484_40	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0177484_40	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0177484_40	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0177484_40	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0177484_42	PHROG	phrog_15198	NA	unknown function
UHGV-0177484_42	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0177484_42	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0177484_42	Pfam	PF04448	NA	DUF551
UHGV-0177484_43	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0177484_43	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0177484_43	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0177484_43	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0177484_43	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0177484_43	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0177484_43	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0177484_44	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0177484_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177484_44	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177484_44	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0177484_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177484_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177484_44	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0177484_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177484_46	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177484_46	UniRef90	UniRef90_K1T7H8	Endodeoxyribonuclease RusA family protein	NA
UHGV-0177484_46	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0177484_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177484_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177484_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177484_50	Structural annotation	PF11417	NA	NA
UHGV-0177484_51	UniRef90	UniRef90_A0A4D7AYE9	Single-stranded DNA-binding protein	NA
UHGV-0177484_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177484_51	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0177484_52	PHROG	phrog_10048	NA	unknown function
UHGV-0177484_52	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0177484_52	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0177484_53	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177484_53	UniRef90	UniRef90_UPI00058C5410	PD-(D/E)XK nuclease family protein	NA
UHGV-0177484_53	eggNOG-mapper	640132.Srot_0032	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0177484_53	COG	COG2887	RecB family exonuclease	NA
UHGV-0177484_53	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0177484_55	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177484_58	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0177484_59	Structural annotation	PF12728	NA	NA
UHGV-0177484_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177484_60	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-0177484_60	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0177484_60	eggNOG-mapper	768726.HMPREF9178_1088	AntA/AntB antirepressor	NA
UHGV-0177484_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177484_60	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0177484_60	Structural annotation	PF03374, COG3645, COG3561	NA	NA