UHGV-0177525

Genome information

vOTU vOTU-019759

Genome length 33,610 bps

CDS count 52

Completeness 80.27% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177525
vOTU ID	vOTU-019759
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578518
BioSample	SAMN07501037
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.05
Jumbo phage	No

Genome content
Genome length	33,610 bps
GC content	61.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.82%
Average CDS length	588.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177525_1	PHROG	phrog_27144	NA	unknown function
UHGV-0177525_1	UniRef90	UniRef90_A0A0U4JXA0	Tail fibers protein	NA
UHGV-0177525_1	eggNOG-mapper	287.DR97_4266	NA	NA
UHGV-0177525_2	PHROG	phrog_5842	NA	unknown function
UHGV-0177525_2	eggNOG-mapper	287.DR97_4265	NA	NA
UHGV-0177525_3	PHROG	phrog_5314	NA	unknown function
UHGV-0177525_3	eggNOG-mapper	1196835.A458_06955	NA	NA
UHGV-0177525_4	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0177525_4	UniRef90	UniRef90_A0A0U3TH20	Tail protein	NA
UHGV-0177525_4	eggNOG-mapper	1301098.PKB_1287	tape measure protein	NA
UHGV-0177525_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0177525_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0177525_4	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0177525_5	PHROG	phrog_18719	NA	unknown function
UHGV-0177525_6	PHROG	phrog_1442	tail assembly chaperone	tail
UHGV-0177525_7	PHROG	phrog_807	major tail protein with Ig-like domain	tail
UHGV-0177525_7	eggNOG-mapper	399739.Pmen_3965	NA	NA
UHGV-0177525_8	PHROG	phrog_5185	NA	unknown function
UHGV-0177525_9	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0177525_9	UniRef90	UniRef90_UPI001F2FD522	glycogen/starch/alpha-glucan phosphorylase	NA
UHGV-0177525_10	PHROG	phrog_12637	NA	unknown function
UHGV-0177525_10	UniRef90	UniRef90_UPI001F2E63C5	head-tail adaptor protein	NA
UHGV-0177525_11	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0177525_11	UniRef90	UniRef90_A0A0U4JEH2	Head-tail connector family protein	NA
UHGV-0177525_11	eggNOG-mapper	1196835.A458_06915	Phage gp6-like head-tail connector protein	NA
UHGV-0177525_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0177525_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0177525_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177525_12	PHROG	phrog_2616	NA	unknown function
UHGV-0177525_13	PHROG	phrog_2616	NA	unknown function
UHGV-0177525_13	eggNOG-mapper	1395516.PMO01_04970	NA	NA
UHGV-0177525_13	Structural annotation	PF01281	NA	NA
UHGV-0177525_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177525_14	UniRef90	UniRef90_A0A0U4JIW8	Major capsid protein	NA
UHGV-0177525_14	eggNOG-mapper	69328.PVLB_09125	capsid protein	NA
UHGV-0177525_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177525_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177525_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177525_14	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0177525_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0177525_15	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0177525_15	UniRef90	UniRef90_A0A8G4EFJ1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0177525_15	eggNOG-mapper	69328.PVLB_09120	Belongs to the peptidase S14 family	NA
UHGV-0177525_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0177525_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0177525_15	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0177525_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177525_16	UniRef90	UniRef90_A0A3S6RNH7	Portal protein	NA
UHGV-0177525_16	eggNOG-mapper	69328.PVLB_09115	portal protein	NA
UHGV-0177525_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177525_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177525_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177525_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177525_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177525_17	UniRef90	UniRef90_A0A0U4B0M7	Terminase large subunit	NA
UHGV-0177525_17	eggNOG-mapper	243924.LT42_17145	terminase	NA
UHGV-0177525_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177525_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177525_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177525_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177525_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0177525_18	UniRef90	UniRef90_A0A8G7PCJ8	P27 family phage terminase small subunit	NA
UHGV-0177525_18	eggNOG-mapper	243924.LT42_17150	phage terminase small subunit	NA
UHGV-0177525_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177525_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0177525_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0177525_19	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177525_19	UniRef90	UniRef90_A0A0U4B0J6	HNH endonuclease	NA
UHGV-0177525_19	eggNOG-mapper	1033743.CAES01000104_gene3504	HNH nucleases	NA
UHGV-0177525_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177525_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177525_19	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0177525_20	PHROG	phrog_89	Rz-like spanin	lysis
UHGV-0177525_20	UniRef90	UniRef90_A0A3S6RQB0	LysB family lysis regulatory protein	NA
UHGV-0177525_20	eggNOG-mapper	399739.Pmen_3950	NA	NA
UHGV-0177525_21	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0177525_21	PHROG	phrog_181	endolysin	lysis
UHGV-0177525_21	UniRef90	UniRef90_A0A509J9Z7	Glycoside hydrolase family 19	NA
UHGV-0177525_21	eggNOG-mapper	287.DR97_4248	Chitinase class I	NA
UHGV-0177525_21	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0177525_21	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0177525_22	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0177525_22	UniRef90	UniRef90_K7SFJ8	Phage holin	NA
UHGV-0177525_22	eggNOG-mapper	287.DR97_4247	Phage holin family (Lysis protein S)	NA
UHGV-0177525_22	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0177525_22	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0177525_22	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0177525_23	PHROG	phrog_3412	NA	unknown function
UHGV-0177525_23	eggNOG-mapper	220664.PFL_3772	NA	NA
UHGV-0177525_24	PHROG	phrog_5085	NA	unknown function
UHGV-0177525_24	eggNOG-mapper	1112217.PPL19_05240	Prophage PssSM-03	NA
UHGV-0177525_25	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177525_25	UniRef90	UniRef90_A0A0U4KL68	Protein ninG	NA
UHGV-0177525_25	eggNOG-mapper	287.DR97_4244	Bacteriophage Lambda NinG protein	NA
UHGV-0177525_25	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0177525_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177525_25	Structural annotation	PF05766	NA	NA
UHGV-0177525_26	PHROG	phrog_17150	NA	unknown function
UHGV-0177525_26	UniRef90	UniRef90_A0A8G7NMJ6	NinG protein	NA
UHGV-0177525_27	PHROG	phrog_109	P-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177525_27	UniRef90	UniRef90_A0A0U4ISJ0	Replication P family protein	NA
UHGV-0177525_27	eggNOG-mapper	287.DR97_4242	Replication protein P	NA
UHGV-0177525_27	Pfam	PF06992	Replication protein P	Phage_lambda_P
UHGV-0177525_27	Structural annotation	PF06992	NA	NA
UHGV-0177525_28	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0177525_28	UniRef90	UniRef90_UPI000F52457C	helix-turn-helix domain-containing protein	NA
UHGV-0177525_28	eggNOG-mapper	287.DR97_4241	DNA-binding transcription factor activity	NA
UHGV-0177525_28	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177525_28	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0177525_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177525_29	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0177525_29	UniRef90	UniRef90_A0A1B0YZY9	DNA-binding protein	NA
UHGV-0177525_29	eggNOG-mapper	1226994.AMZB01000059_gene3598	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0177525_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0177525_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177525_29	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0177525_29	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0177525_30	PHROG	phrog_10248	NA	unknown function
UHGV-0177525_30	UniRef90	UniRef90_UPI001E6370CF	helix-turn-helix domain-containing protein	NA
UHGV-0177525_30	eggNOG-mapper	549.BW31_01401	sequence-specific DNA binding	NA
UHGV-0177525_30	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0177525_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0177525_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0177525_31	UniRef90	UniRef90_A0A2C9WXH1	Peptidase_S24 domain-containing protein	NA
UHGV-0177525_31	eggNOG-mapper	280701.Q5QF80_9CAUD	Peptidase S24-like	NA
UHGV-0177525_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0177525_32	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0177525_32	UniRef90	UniRef90_A0A8G2U5R6	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0177525_32	eggNOG-mapper	233412.HD_0911	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0177525_32	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0177525_32	Structural annotation	COG1724	NA	NA
UHGV-0177525_33	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0177525_33	UniRef90	UniRef90_A0A8G2WYJ8	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0177525_33	eggNOG-mapper	1046627.BZARG_205	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0177525_33	Pfam	PF05534	HicB family	HicB
UHGV-0177525_33	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0177525_35	PHROG	phrog_2707	NA	unknown function
UHGV-0177525_35	UniRef90	UniRef90_UPI0003BB526E	NA	NA
UHGV-0177525_35	eggNOG-mapper	1388763.O165_010825	NA	NA
UHGV-0177525_35	Pfam	PF07867	NA	DUF1654
UHGV-0177525_37	KOfam	K05840	DRD5; dopamine receptor D5	NA
UHGV-0177525_37	PHROG	phrog_18079	NA	unknown function
UHGV-0177525_37	eggNOG-mapper	194699.Q775A9_BPBPP	NA	NA
UHGV-0177525_37	AcrCatalog	cluster_5158	NA	NA
UHGV-0177525_37	Pfam	PF15999	NA	DUF4774
UHGV-0177525_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177525_38	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177525_38	UniRef90	UniRef90_UPI000E313115	ParB N-terminal domain-containing protein	NA
UHGV-0177525_38	eggNOG-mapper	287.DR97_4233	DNA binding	NA
UHGV-0177525_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177525_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0177525_39	KOfam	K18098	bjaR1, rpaR, rhiR; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1	NA
UHGV-0177525_39	PHROG	phrog_3282	sigma factor	transcription regulation
UHGV-0177525_39	UniRef90	UniRef90_B3G1P8	HTH luxR-type domain-containing protein	NA
UHGV-0177525_39	eggNOG-mapper	287.DR97_4232	helix_turn_helix, Lux Regulon	NA
UHGV-0177525_39	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0177525_40	PHROG	phrog_6742	NA	unknown function
UHGV-0177525_40	eggNOG-mapper	287.DR97_4231	NA	NA
UHGV-0177525_41	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177525_41	UniRef90	UniRef90_A0A2C9WXI1	DNA_pol3_beta_2 domain-containing protein	NA
UHGV-0177525_41	eggNOG-mapper	95619.PM1_0217535	DNA-directed DNA polymerase activity	NA
UHGV-0177525_41	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0177525_41	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0177525_42	PHROG	phrog_5439	NA	unknown function
UHGV-0177525_43	PHROG	phrog_20424	NA	unknown function
UHGV-0177525_43	eggNOG-mapper	237609.PSAKL28_18840	NA	NA
UHGV-0177525_44	PHROG	phrog_5781	NA	unknown function
UHGV-0177525_44	UniRef90	UniRef90_A0A0U4IBL4	N-(Deoxy)ribosyltransferase-like protein	NA
UHGV-0177525_44	eggNOG-mapper	287.DR97_4227	NA	NA
UHGV-0177525_44	Pfam	PF14359	NA	DUF4406
UHGV-0177525_45	PHROG	phrog_874	NA	unknown function
UHGV-0177525_45	eggNOG-mapper	1129146.H2BDG4_9CAUD	NA	NA
UHGV-0177525_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0177525_46	PHROG	phrog_6604	NA	unknown function
UHGV-0177525_46	eggNOG-mapper	287.DR97_4224	NA	NA
UHGV-0177525_46	AcrCatalog	cluster_2684	NA	NA
UHGV-0177525_47	PHROG	phrog_9134	NA	unknown function
UHGV-0177525_48	PHROG	phrog_9434	NA	unknown function
UHGV-0177525_48	eggNOG-mapper	287.DR97_5362	NA	NA
UHGV-0177525_49	PHROG	phrog_13613	NA	unknown function
UHGV-0177525_50	PHROG	phrog_3592	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177525_50	eggNOG-mapper	1437882.AZRU01000157_gene4330	NA	NA
UHGV-0177525_51	PHROG	phrog_2730	NA	unknown function
UHGV-0177525_51	eggNOG-mapper	257310.BB1671	NA	NA
UHGV-0177525_52	PHROG	phrog_7427	NA	unknown function