UHGV-0177530

Genome information

Genome length 42,451 bps

CDS count 74

Completeness 68.60% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177530
vOTU ID	vOTU-068486
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588601
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	68.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.83
Jumbo phage	No

Genome content
Genome length	42,451 bps
GC content	56.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	93.16%
Average CDS length	539.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177530_2	PHROG	phrog_1194	NA	unknown function
UHGV-0177530_2	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0177530_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177530_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177530_3	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0177530_3	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0177530_3	COG	COG1511	NA	NA
UHGV-0177530_3	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0177530_4	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0177530_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0177530_4	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0177530_4	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0177530_5	PHROG	phrog_706	NA	unknown function
UHGV-0177530_5	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0177530_5	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0177530_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177530_5	Structural annotation	PF06854	NA	NA
UHGV-0177530_6	PHROG	phrog_11299	NA	unknown function
UHGV-0177530_6	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0177530_6	Structural annotation	PF10666	NA	NA
UHGV-0177530_7	PHROG	phrog_3099	NA	unknown function
UHGV-0177530_7	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0177530_7	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0177530_8	PHROG	phrog_3266	tail completion	connector
UHGV-0177530_8	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0177530_8	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0177530_8	Structural annotation	PF12691	NA	NA
UHGV-0177530_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177530_9	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-0177530_9	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0177530_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177530_9	Structural annotation	PF11114	NA	NA
UHGV-0177530_10	PHROG	phrog_3366	NA	unknown function
UHGV-0177530_10	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0177530_10	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0177530_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177530_11	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0177530_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177530_12	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0177530_12	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0177530_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177530_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177530_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177530_12	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177530_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0177530_13	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0177530_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177530_14	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0177530_14	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0177530_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177530_14	COG	COG2369	NA	NA
UHGV-0177530_14	Structural annotation	PF06152	NA	NA
UHGV-0177530_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177530_15	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0177530_15	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0177530_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177530_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177530_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177530_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0177530_16	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0177530_16	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0177530_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177530_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0177530_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177530_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177530_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177530_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0177530_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0177530_18	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0177530_18	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0177530_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177530_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177530_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0177530_18	COG	COG0863	DNA modification methylase	NA
UHGV-0177530_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0177530_20	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0177530_20	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0177530_22	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0177530_22	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0177530_22	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0177530_25	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0177530_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177530_25	Structural annotation	TIGR03655	NA	NA
UHGV-0177530_26	PHROG	phrog_38832	NA	unknown function
UHGV-0177530_26	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0177530_26	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0177530_28	PHROG	phrog_924	NA	unknown function
UHGV-0177530_28	UniRef90	UniRef90_U2SKB7	NA	NA
UHGV-0177530_28	Pfam	PF04448	NA	DUF551
UHGV-0177530_28	Structural annotation	NF041588	NA	NA
UHGV-0177530_29	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0177530_29	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0177530_29	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0177530_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0177530_29	Structural annotation	PF05869, MF_01872, NF000058, COG0286	NA	NA
UHGV-0177530_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0177530_31	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0177530_31	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0177530_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177530_31	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0177530_32	PHROG	phrog_474	phosphofructokinase	other
UHGV-0177530_32	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0177530_32	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0177530_32	Pfam	PF19905	NA	DUF6378
UHGV-0177530_32	Structural annotation	PF19905	NA	NA
UHGV-0177530_34	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0177530_34	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0177530_34	UniRef90	UniRef90_A0A2A7B932	Thymidylate synthase (FAD)	NA
UHGV-0177530_34	eggNOG-mapper	397290.C810_05227	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0177530_34	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0177530_34	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0177530_34	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0177530_34	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0177530_35	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177530_35	UniRef90	UniRef90_A0A265Q747	AP2/ERF domain-containing protein	NA
UHGV-0177530_35	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0177530_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177530_36	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0177530_36	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0177530_36	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0177530_37	PHROG	phrog_15768	NA	unknown function
UHGV-0177530_37	Pfam	PF19808	NA	DUF6291
UHGV-0177530_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177530_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177530_38	UniRef90	UniRef90_A0A3D3Y0K5	Single-stranded DNA-binding protein	NA
UHGV-0177530_38	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0177530_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177530_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177530_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177530_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177530_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177530_39	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177530_39	UniRef90	UniRef90_A0A7C6TX57	HNH endonuclease	NA
UHGV-0177530_39	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0177530_39	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0177530_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177530_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0177530_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177530_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177530_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177530_41	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0177530_41	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0177530_42	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177530_42	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0177530_42	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0177530_42	Pfam	PF06378	NA	DUF1071
UHGV-0177530_42	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0177530_43	PHROG	phrog_1123	NA	unknown function
UHGV-0177530_43	UniRef90	UniRef90_R6TS56	Sensory box histidine kinase/response regulator C-part	NA
UHGV-0177530_43	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-0177530_44	Pfam	PF09943	NA	DUF2175
UHGV-0177530_46	UniRef90	UniRef90_A0A2Z4GU98	Ribonuclease inhibitor	NA
UHGV-0177530_46	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0177530_48	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0177530_48	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0177530_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177530_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0177530_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177530_50	eggNOG-mapper	553973.CLOHYLEM_05105	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177530_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177530_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177530_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177530_54	KOfam	K14059	int; integrase	NA
UHGV-0177530_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0177530_54	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0177530_54	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0177530_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177530_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177530_54	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0177530_55	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0177530_56	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0177530_56	Structural annotation	PF12510	NA	NA
UHGV-0177530_57	PHROG	phrog_20016	NA	unknown function
UHGV-0177530_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177530_57	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0177530_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177530_58	PHROG	phrog_16490	NA	unknown function
UHGV-0177530_58	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177530_59	PHROG	phrog_22984	NA	unknown function
UHGV-0177530_60	PHROG	phrog_21718	NA	unknown function
UHGV-0177530_60	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177530_61	PHROG	phrog_3754	NA	unknown function
UHGV-0177530_61	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0177530_63	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0177530_63	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0177530_63	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0177530_64	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177530_64	PHROG	phrog_435	endolysin	lysis
UHGV-0177530_64	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177530_64	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177530_64	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0177530_64	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0177530_64	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177530_64	Structural annotation	PF01520, PF01832, NF038016, NF038140, NF041850, COG1705, COG0860, COG3807	NA	NA
UHGV-0177530_65	PHROG	phrog_13256	NA	unknown function
UHGV-0177530_65	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0177530_67	PHROG	phrog_4105	NA	unknown function
UHGV-0177530_67	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0177530_70	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0177530_70	Structural annotation	PF21722	NA	NA
UHGV-0177530_71	PHROG	phrog_18725	NA	unknown function
UHGV-0177530_71	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0177530_71	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0177530_72	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0177530_72	PHROG	phrog_11157	NA	unknown function
UHGV-0177530_72	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0177530_72	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0177530_72	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0177530_72	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0177530_72	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0177530_72	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0177530_73	PHROG	phrog_1589	NA	unknown function
UHGV-0177530_73	UniRef90	UniRef90_A2EQK5	Surface antigen BspA-like	NA
UHGV-0177530_73	eggNOG-mapper	1151292.QEW_2455	NA	NA
UHGV-0177530_73	Pfam	PF12810	Glycine rich protein	Gly_rich
UHGV-0177530_73	Structural annotation	PF12810, PF16893, TIGR04488, COG3979	NA	NA
UHGV-0177530_74	PHROG	phrog_13879	NA	unknown function
UHGV-0177530_74	eggNOG-mapper	693746.OBV_18210	NA	NA