UHGV-0177554

Genome information

Genome length 29,201 bps

CDS count 48

Completeness 53.22% (medium-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177554
vOTU ID	vOTU-028973
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580988
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.1
Jumbo phage	No

Genome content
Genome length	29,201 bps
GC content	35.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.00%
Average CDS length	574.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177554_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177554_1	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0177554_1	UniRef90	UniRef90_A0A6L5T7D2	PBSX family phage terminase large subunit	NA
UHGV-0177554_1	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-0177554_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177554_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0177554_1	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177554_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177554_1	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177554_2	PHROG	phrog_1233	NA	unknown function
UHGV-0177554_2	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0177554_2	Structural annotation	PF13058	NA	NA
UHGV-0177554_3	PHROG	phrog_1220	head protein	head and packaging
UHGV-0177554_3	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0177554_3	eggNOG-mapper	1145276.T479_12190	NA	NA
UHGV-0177554_3	Structural annotation	PF20747	NA	NA
UHGV-0177554_4	PHROG	phrog_15594	NA	unknown function
UHGV-0177554_4	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0177554_4	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0177554_6	PHROG	phrog_1197	tail protein	tail
UHGV-0177554_6	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-0177554_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0177554_10	PHROG	phrog_443	holin	lysis
UHGV-0177554_10	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0177554_10	eggNOG-mapper	1321814.HMPREF9089_00942	Putative lactococcus lactis phage r1t holin	NA
UHGV-0177554_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0177554_11	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177554_11	PHROG	phrog_435	endolysin	lysis
UHGV-0177554_11	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177554_11	eggNOG-mapper	1392487.JIAD01000001_gene633	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177554_11	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177554_11	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177554_11	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0177554_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177554_13	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0177554_13	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-0177554_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177554_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177554_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177554_14	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0177554_14	eggNOG-mapper	883114.HMPREF9709_01197	Phage minor capsid protein 2	NA
UHGV-0177554_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177554_14	COG	COG2369	NA	NA
UHGV-0177554_14	Structural annotation	PF06152	NA	NA
UHGV-0177554_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177554_15	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0177554_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177554_15	Structural annotation	PF06810	NA	NA
UHGV-0177554_16	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0177554_16	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-0177554_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0177554_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177554_16	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177554_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177554_19	PHROG	phrog_3366	NA	unknown function
UHGV-0177554_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177554_20	UniRef90	UniRef90_UPI0011DCF08B	minor capsid protein	NA
UHGV-0177554_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177554_20	Structural annotation	PF11114	NA	NA
UHGV-0177554_21	Structural annotation	PF12691	NA	NA
UHGV-0177554_22	PHROG	phrog_3099	NA	unknown function
UHGV-0177554_22	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0177554_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177554_23	Structural annotation	PF20378	NA	NA
UHGV-0177554_24	PHROG	phrog_706	NA	unknown function
UHGV-0177554_24	UniRef90	UniRef90_UPI00164A5BA4	Gp15 family bacteriophage protein	NA
UHGV-0177554_24	eggNOG-mapper	1121871.AUAT01000035_gene1279	Bacteriophage Gp15 protein	NA
UHGV-0177554_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177554_24	Structural annotation	PF06854	NA	NA
UHGV-0177554_25	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0177554_25	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0177554_25	COG	COG5412	Phage-related protein	NA
UHGV-0177554_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177554_26	UniRef90	UniRef90_UPI001655C860	phage tail family protein	NA
UHGV-0177554_26	eggNOG-mapper	1540257.JQMW01000013_gene730	Phage tail protein	NA
UHGV-0177554_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177554_26	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0177554_27	UniRef90	UniRef90_A0A1I1Y2T7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0177554_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0177554_27	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177554_28	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0177554_28	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0177554_29	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0177554_29	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0177554_30	PHROG	phrog_21718	NA	unknown function
UHGV-0177554_30	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177554_32	PHROG	phrog_16490	NA	unknown function
UHGV-0177554_32	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0177554_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177554_40	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0177554_40	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0177554_40	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0177554_40	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0177554_40	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0177554_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0177554_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0177554_40	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0177554_43	Structural annotation	PF05777, MF_01186, COG2980	NA	NA
UHGV-0177554_44	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177554_44	UniRef90	UniRef90_UPI0015C4C593	conserved phage C-terminal domain-containing protein	NA
UHGV-0177554_44	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0177554_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177554_44	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0177554_45	PHROG	phrog_2113	NA	unknown function
UHGV-0177554_45	eggNOG-mapper	195253.Syn6312_1141	NA	NA
UHGV-0177554_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177554_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177554_46	UniRef90	UniRef90_A0A843GUW7	ATP-binding protein	NA
UHGV-0177554_46	eggNOG-mapper	871584.D9ZNG3_9CAUD	IstB-like ATP binding protein	NA
UHGV-0177554_46	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0177554_47	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0177554_47	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0177554_47	UniRef90	UniRef90_A0A843GEY3	SF4 helicase domain-containing protein	NA
UHGV-0177554_47	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0177554_47	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0177554_47	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0177554_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0177554_48	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0177554_48	UniRef90	UniRef90_A0A7X7EMQ9	Toprim domain-containing protein	NA
UHGV-0177554_48	eggNOG-mapper	871584.D9ZNG6_9CAUD	Toprim-like	NA
UHGV-0177554_48	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0177554_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0177554_48	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA