UHGV-0177574

Genome information

Genome length 37,132 bps

CDS count 74

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177574
vOTU ID	vOTU-046627
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586159
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.66
Jumbo phage	No

Genome content
Genome length	37,132 bps
GC content	53.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	93.19%
Average CDS length	473.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177574_2	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0177574_2	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177574_2	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177574_3	PHROG	phrog_38832	NA	unknown function
UHGV-0177574_3	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0177574_3	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0177574_6	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177574_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177574_6	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0177574_6	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177574_6	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177574_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177574_6	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0177574_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177574_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177574_8	UniRef90	UniRef90_A0A7X9D805	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177574_8	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0177574_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177574_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177574_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177574_10	PHROG	phrog_15768	NA	unknown function
UHGV-0177574_10	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0177574_10	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0177574_10	AcrCatalog	cluster_38323	NA	NA
UHGV-0177574_10	Pfam	PF19808	NA	DUF6291
UHGV-0177574_10	Structural annotation	PF19808	NA	NA
UHGV-0177574_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177574_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177574_11	UniRef90	UniRef90_A0A1Q6RGI0	Single-stranded DNA-binding protein	NA
UHGV-0177574_11	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0177574_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177574_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177574_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177574_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177574_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177574_12	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177574_12	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0177574_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177574_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177574_13	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0177574_13	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177574_13	Structural annotation	PF05772	NA	NA
UHGV-0177574_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177574_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0177574_14	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0177574_14	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0177574_16	PHROG	phrog_4973	NA	unknown function
UHGV-0177574_16	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0177574_16	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0177574_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0177574_16	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0177574_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177574_23	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0177574_23	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0177574_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0177574_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177574_24	eggNOG-mapper	663278.Ethha_0519	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0177574_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177574_24	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0177574_24	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177574_25	PHROG	phrog_585	NA	unknown function
UHGV-0177574_25	UniRef90	UniRef90_A0A514XRE8	NA	NA
UHGV-0177574_25	eggNOG-mapper	438780.D2KRD9_9CAUD	NA	NA
UHGV-0177574_25	Pfam	PF10711	NA	DUF2513
UHGV-0177574_25	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0177574_28	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0177574_28	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0177574_29	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0177574_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177574_29	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0177574_29	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0177574_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177574_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0177574_30	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0177574_30	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0177574_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177574_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177574_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177574_30	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0177574_31	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0177574_32	Structural annotation	PF12510	NA	NA
UHGV-0177574_33	PHROG	phrog_20016	NA	unknown function
UHGV-0177574_33	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0177574_33	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0177574_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177574_34	PHROG	phrog_16490	NA	unknown function
UHGV-0177574_34	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177574_35	PHROG	phrog_22984	NA	unknown function
UHGV-0177574_36	PHROG	phrog_21718	NA	unknown function
UHGV-0177574_36	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177574_37	PHROG	phrog_3754	NA	unknown function
UHGV-0177574_37	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0177574_39	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0177574_40	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0177574_40	PHROG	phrog_894	endolysin	lysis
UHGV-0177574_40	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0177574_40	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0177574_40	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0177574_40	COG	COG3108	NA	NA
UHGV-0177574_40	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0177574_41	PHROG	phrog_18955	NA	unknown function
UHGV-0177574_41	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0177574_41	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0177574_41	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0177574_41	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0177574_43	PHROG	phrog_13256	NA	unknown function
UHGV-0177574_43	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0177574_44	PHROG	phrog_4105	NA	unknown function
UHGV-0177574_44	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0177574_45	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0177574_46	PHROG	phrog_32744	NA	unknown function
UHGV-0177574_46	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0177574_46	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0177574_47	PHROG	phrog_1194	NA	unknown function
UHGV-0177574_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177574_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0177574_48	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-0177574_48	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0177574_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0177574_48	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0177574_50	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0177574_51	PHROG	phrog_885	major tail protein	tail
UHGV-0177574_51	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0177574_51	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0177574_51	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0177574_52	PHROG	phrog_17405	head protein	head and packaging
UHGV-0177574_52	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0177574_52	Structural annotation	PF11367	NA	NA
UHGV-0177574_53	PHROG	phrog_17977	NA	unknown function
UHGV-0177574_53	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0177574_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0177574_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177574_55	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0177574_55	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0177574_55	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0177574_55	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177574_56	Structural annotation	PF06810	NA	NA
UHGV-0177574_57	Structural annotation	PF18152	NA	NA
UHGV-0177574_58	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177574_58	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0177574_58	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0177574_58	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177574_58	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0177574_59	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0177574_59	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0177574_59	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0177574_59	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0177574_59	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0177574_59	COG	COG2369	NA	NA
UHGV-0177574_59	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0177574_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0177574_60	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0177574_60	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0177574_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177574_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0177574_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0177574_61	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0177574_61	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0177574_61	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0177574_63	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0177574_63	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0177574_63	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0177574_63	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0177574_63	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0177574_64	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177574_64	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177574_64	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0177574_64	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0177574_64	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177574_64	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177574_64	COG	COG0863	DNA modification methylase	NA
UHGV-0177574_64	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0177574_65	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0177574_65	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0177574_65	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0177574_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177574_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177574_66	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0177574_67	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0177574_67	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-0177574_67	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-0177574_67	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0177574_67	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0177574_67	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0177574_71	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA