UHGV-0177579

Genome information

Genome length 41,708 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177579
vOTU ID	vOTU-005547
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584614
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.55
Jumbo phage	No

Genome content
Genome length	41,708 bps
GC content	60.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.50%
Average CDS length	687.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177579_1	KOfam	K07369	MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1 [EC:3.4.22.-]	NA
UHGV-0177579_1	PHROG	phrog_4069	Hoc-like head decoration	head and packaging
UHGV-0177579_1	Pfam	PF07679	Immunoglobulin I-set domain	I-set
UHGV-0177579_1	COG	COG3227	Zn-dependent metalloprotease (Neutral protease B)	NA
UHGV-0177579_3	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0177579_3	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0177579_4	PHROG	phrog_22978	NA	unknown function
UHGV-0177579_4	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-0177579_4	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0177579_4	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0177579_5	eggNOG-mapper	748224.HMPREF9436_02540	NA	NA
UHGV-0177579_6	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-0177579_7	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0177579_7	eggNOG-mapper	657322.FPR_02360	NA	NA
UHGV-0177579_7	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0177579_8	PHROG	phrog_12105	NA	unknown function
UHGV-0177579_8	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0177579_9	PHROG	phrog_15239	NA	unknown function
UHGV-0177579_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0177579_10	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0177579_10	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0177579_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0177579_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177579_11	PHROG	phrog_13908	NA	unknown function
UHGV-0177579_11	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0177579_12	Structural annotation	NF011130, COG2868	NA	NA
UHGV-0177579_13	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177579_13	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0177579_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0177579_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177579_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177579_14	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0177579_14	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0177579_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177579_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177579_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177579_15	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0177579_16	Structural annotation	COG4451	NA	NA
UHGV-0177579_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177579_18	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0177579_18	UniRef90	UniRef90_A0A2V2FT63	HTH cro/C1-type domain-containing protein	NA
UHGV-0177579_18	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177579_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177579_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177579_20	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-0177579_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0177579_22	PHROG	phrog_824	NA	unknown function
UHGV-0177579_22	UniRef90	UniRef90_A0A645FWL0	VRR-NUC domain-containing protein	NA
UHGV-0177579_22	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0177579_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0177579_25	PHROG	phrog_7704	NA	unknown function
UHGV-0177579_25	Pfam	PF04448	NA	DUF551
UHGV-0177579_26	UniRef90	UniRef90_A0A355YPF1	NA	NA
UHGV-0177579_26	Pfam	PF04448	NA	DUF551
UHGV-0177579_26	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0177579_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177579_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177579_27	UniRef90	UniRef90_UPI0009ED8E5A	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0177579_27	eggNOG-mapper	1291050.JAGE01000001_gene2907	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177579_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177579_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177579_27	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0177579_28	Structural annotation	TIGR03655	NA	NA
UHGV-0177579_29	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0177579_30	Structural annotation	PF03368, TIGR03655	NA	NA
UHGV-0177579_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0177579_33	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0177579_34	eggNOG-mapper	1034347.CAHJ01000051_gene30	NA	NA
UHGV-0177579_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177579_38	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0177579_38	UniRef90	UniRef90_A0A1C6C9V1	Predicted transcriptional regulator	NA
UHGV-0177579_38	eggNOG-mapper	622312.ROSEINA2194_03428	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0177579_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177579_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177579_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177579_42	KOfam	K14059	int; integrase	NA
UHGV-0177579_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0177579_42	UniRef90	UniRef90_A0A1Q6PWD2	Tyr recombinase domain-containing protein	NA
UHGV-0177579_42	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0177579_42	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0177579_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177579_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177579_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177579_43	Structural annotation	PF12510	NA	NA
UHGV-0177579_44	PHROG	phrog_20016	NA	unknown function
UHGV-0177579_44	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177579_44	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0177579_44	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177579_45	PHROG	phrog_16490	NA	unknown function
UHGV-0177579_45	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177579_46	PHROG	phrog_22984	NA	unknown function
UHGV-0177579_47	PHROG	phrog_21718	NA	unknown function
UHGV-0177579_47	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177579_48	PHROG	phrog_3754	NA	unknown function
UHGV-0177579_48	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0177579_49	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0177579_49	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0177579_49	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0177579_49	Structural annotation	PF08281, MF_00245, NF001070, COG2739	NA	NA
UHGV-0177579_50	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0177579_51	PHROG	phrog_1863	NA	unknown function
UHGV-0177579_51	eggNOG-mapper	641107.CDLVIII_1359	NA	NA
UHGV-0177579_52	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0177579_52	PHROG	phrog_329	minor tail protein	tail
UHGV-0177579_52	UniRef90	UniRef90_A0A7C6FNM5	NlpC/P60 domain-containing protein	NA
UHGV-0177579_52	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0177579_52	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0177579_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0177579_52	Structural annotation	PF00877, PF14627, NF033742, COG0791, COG4991	NA	NA
UHGV-0177579_54	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0177579_54	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0177579_55	PHROG	phrog_30034	NA	unknown function
UHGV-0177579_55	UniRef90	UniRef90_R5QX84	Carbohydrate binding domain protein	NA
UHGV-0177579_55	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0177579_55	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0177579_55	Structural annotation	PF14600	NA	NA
UHGV-0177579_57	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0177579_57	Structural annotation	PF21722	NA	NA