UHGV-0177583

Genome information

Genome length 53,696 bps

CDS count 76

Completeness 100.00% (complete)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177583
vOTU ID	vOTU-046628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584610
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.97
Jumbo phage	No

Genome content
Genome length	53,696 bps
GC content	51.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	93.93%
Average CDS length	667.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177583_1	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0177583_2	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0177583_3	KOfam	K14059	int; integrase	NA
UHGV-0177583_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0177583_3	UniRef90	UniRef90_UPI0013EAC0FC	site-specific integrase	NA
UHGV-0177583_3	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0177583_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177583_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177583_3	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0177583_4	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0177583_4	eggNOG-mapper	556261.HMPREF0240_01759	Putative restriction endonuclease	NA
UHGV-0177583_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0177583_4	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0177583_4	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0177583_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177583_11	UniRef90	UniRef90_A0A3D0NVE8	HTH cro/C1-type domain-containing protein	NA
UHGV-0177583_11	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0177583_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177583_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177583_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177583_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0177583_17	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0177583_17	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0177583_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0177583_17	Structural annotation	PF05565	NA	NA
UHGV-0177583_18	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177583_18	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0177583_18	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0177583_18	Pfam	PF06378	NA	DUF1071
UHGV-0177583_18	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0177583_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177583_19	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0177583_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0177583_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177583_20	PHROG	phrog_7566	NA	unknown function
UHGV-0177583_20	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0177583_21	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0177583_21	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0177583_22	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0177583_23	PHROG	phrog_4973	NA	unknown function
UHGV-0177583_23	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0177583_23	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0177583_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177583_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177583_24	UniRef90	UniRef90_R6TSJ9	Single-stranded DNA-binding protein	NA
UHGV-0177583_24	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0177583_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177583_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177583_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177583_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177583_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0177583_25	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0177583_25	UniRef90	UniRef90_A0A4S2A9L5	Replisome organizer	NA
UHGV-0177583_25	eggNOG-mapper	1235802.C823_06033	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0177583_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0177583_25	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0177583_25	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0177583_28	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0177583_28	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0177583_28	UniRef90	UniRef90_A0A413G4P8	SF4 helicase domain-containing protein	NA
UHGV-0177583_28	eggNOG-mapper	247490.KSU1_C0210	Participates in initiation and elongation during chromosome replication	NA
UHGV-0177583_28	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0177583_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0177583_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0177583_28	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0177583_30	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0177583_30	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0177583_30	UniRef90	UniRef90_A0A1Q6KPW4	DNA methyltransferase	NA
UHGV-0177583_30	eggNOG-mapper	742740.HMPREF9474_03058	Belongs to the MT-A70-like family	NA
UHGV-0177583_30	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0177583_30	Pfam	PF05063	MT-A70	MT-A70
UHGV-0177583_30	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0177583_30	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0177583_31	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177583_31	UniRef90	UniRef90_A0A4P8JTL4	NA	NA
UHGV-0177583_31	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0177583_31	Pfam	PF06356	NA	DUF1064
UHGV-0177583_31	Structural annotation	PF06356	NA	NA
UHGV-0177583_32	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0177583_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177583_33	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0177583_33	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177583_33	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0177583_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177583_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177583_35	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0177583_35	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0177583_35	eggNOG-mapper	1497679.EP56_15100	NA	NA
UHGV-0177583_37	PHROG	phrog_10714	NA	unknown function
UHGV-0177583_37	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0177583_42	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0177583_42	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0177583_42	eggNOG-mapper	908338.HMPREF9286_1675	Belongs to the sigma-70 factor family	NA
UHGV-0177583_42	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0177583_42	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0177583_42	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0177583_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0177583_42	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0177583_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177583_44	UniRef90	UniRef90_A0A7X9GB27	RNA polymerase subunit sigma-24	NA
UHGV-0177583_44	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0177583_45	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0177583_45	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177583_45	UniRef90	UniRef90_A0A316QLT9	HNH endonuclease	NA
UHGV-0177583_45	eggNOG-mapper	1193128.A200_06523	HNH endonuclease	NA
UHGV-0177583_45	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0177583_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177583_46	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0177583_47	PHROG	phrog_22978	NA	unknown function
UHGV-0177583_47	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0177583_47	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0177583_47	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0177583_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177583_49	PHROG	phrog_15001	endolysin	lysis
UHGV-0177583_49	UniRef90	UniRef90_R6U0F7	Putative lipoprotein	NA
UHGV-0177583_49	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0177583_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0177583_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0177583_50	PHROG	phrog_1129	holin	lysis
UHGV-0177583_50	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0177583_50	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0177583_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0177583_50	Structural annotation	PF06946	NA	NA
UHGV-0177583_51	PHROG	phrog_918	NA	unknown function
UHGV-0177583_51	UniRef90	UniRef90_UPI0013775FB5	NA	NA
UHGV-0177583_51	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0177583_51	Pfam	PF19791	NA	DUF6275
UHGV-0177583_51	Structural annotation	PF19791	NA	NA
UHGV-0177583_53	PHROG	phrog_37604	NA	unknown function
UHGV-0177583_53	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0177583_56	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0177583_57	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0177583_57	PHROG	phrog_366	tail fiber protein	tail
UHGV-0177583_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177583_59	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0177583_59	eggNOG-mapper	657322.FPR_02360	NA	NA
UHGV-0177583_59	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-0177583_60	Structural annotation	PF20387	NA	NA
UHGV-0177583_62	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0177583_62	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0177583_62	eggNOG-mapper	871968.DESME_08900	NA	NA
UHGV-0177583_62	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0177583_62	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0177583_64	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177583_64	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0177583_64	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0177583_67	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177583_67	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0177583_67	UniRef90	UniRef90_A0A413FUY4	Terminase_3 domain-containing protein	NA
UHGV-0177583_67	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0177583_67	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177583_67	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177583_67	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177583_68	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0177583_68	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177583_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177583_72	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0177583_74	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0177583_75	eggNOG-mapper	1235790.C805_00060	NA	NA