UHGV-0177650

Genome information

Genome length 40,440 bps

CDS count 73

Completeness 95.98% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177650
vOTU ID	vOTU-078475
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591015
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.43
Jumbo phage	No

Genome content
Genome length	40,440 bps
GC content	38.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.45%
Average CDS length	504.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177650_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177650_1	PHROG	phrog_435	endolysin	lysis
UHGV-0177650_1	UniRef90	UniRef90_A0A1Q6KUK5	SPOR domain-containing protein	NA
UHGV-0177650_1	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0177650_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177650_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-0177650_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177650_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0177650_2	PHROG	phrog_1129	holin	lysis
UHGV-0177650_2	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0177650_2	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0177650_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0177650_2	Structural annotation	PF06946	NA	NA
UHGV-0177650_3	PHROG	phrog_4105	NA	unknown function
UHGV-0177650_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0177650_6	PHROG	phrog_18725	NA	unknown function
UHGV-0177650_6	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0177650_8	PHROG	phrog_13879	NA	unknown function
UHGV-0177650_8	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0177650_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0177650_9	PHROG	phrog_1194	NA	unknown function
UHGV-0177650_9	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0177650_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177650_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177650_10	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0177650_10	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0177650_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0177650_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0177650_11	PHROG	phrog_706	NA	unknown function
UHGV-0177650_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0177650_11	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0177650_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177650_11	Structural annotation	PF06854	NA	NA
UHGV-0177650_12	Structural annotation	PF10666	NA	NA
UHGV-0177650_13	PHROG	phrog_3099	NA	unknown function
UHGV-0177650_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177650_14	Structural annotation	PF12691	NA	NA
UHGV-0177650_15	PHROG	phrog_3366	NA	unknown function
UHGV-0177650_15	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0177650_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177650_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177650_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0177650_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177650_17	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0177650_17	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0177650_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0177650_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177650_18	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0177650_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0177650_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177650_20	PHROG	phrog_1233	NA	unknown function
UHGV-0177650_20	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0177650_20	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0177650_21	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0177650_22	PHROG	phrog_20016	NA	unknown function
UHGV-0177650_22	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177650_22	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0177650_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177650_23	PHROG	phrog_16490	NA	unknown function
UHGV-0177650_23	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0177650_24	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0177650_25	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0177650_26	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0177650_26	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0177650_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177650_27	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0177650_27	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0177650_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177650_27	COG	COG2369	NA	NA
UHGV-0177650_27	Structural annotation	PF06152	NA	NA
UHGV-0177650_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177650_28	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0177650_28	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0177650_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177650_28	Structural annotation	PF11114	NA	NA
UHGV-0177650_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177650_30	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0177650_30	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0177650_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177650_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177650_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0177650_31	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0177650_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0177650_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177650_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177650_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177650_31	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177650_32	PHROG	phrog_33130	NA	unknown function
UHGV-0177650_32	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0177650_32	Structural annotation	PF10922	NA	NA
UHGV-0177650_34	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0177650_34	UniRef90	UniRef90_A0A3R5WW48	XRE family transcriptional regulator	NA
UHGV-0177650_34	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0177650_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177650_34	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0177650_37	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0177650_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177650_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177650_38	UniRef90	UniRef90_A0A1Q6KUL6	PAPS_reduct domain-containing protein	NA
UHGV-0177650_38	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177650_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177650_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177650_38	Structural annotation	PF01507	NA	NA
UHGV-0177650_39	UniRef90	UniRef90_A0A1C5QCK7	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0177650_39	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177650_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177650_41	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0177650_41	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-0177650_41	eggNOG-mapper	1541959.KQ51_00203	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0177650_41	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0177650_41	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0177650_43	PHROG	phrog_17284	NA	unknown function
UHGV-0177650_43	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177650_43	eggNOG-mapper	1123299.AUKZ01000016_gene1713	C-5 cytosine-specific DNA methylase	NA
UHGV-0177650_43	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0177650_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177650_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177650_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177650_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177650_44	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177650_44	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0177650_44	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0177650_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177650_44	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177650_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177650_44	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0177650_45	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0177650_45	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0177650_45	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0177650_45	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0177650_45	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0177650_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0177650_45	COG	COG0863	DNA modification methylase	NA
UHGV-0177650_45	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0177650_46	PHROG	phrog_874	NA	unknown function
UHGV-0177650_46	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0177650_46	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0177650_48	PHROG	phrog_20593	NA	unknown function
UHGV-0177650_49	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177650_49	UniRef90	UniRef90_A0A3R6D179	Restriction alleviation protein, Lar family	NA
UHGV-0177650_49	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177650_49	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0177650_49	Structural annotation	TIGR03655	NA	NA
UHGV-0177650_52	PHROG	phrog_8684	NA	unknown function
UHGV-0177650_52	UniRef90	UniRef90_A0A844E7A6	YopX domain-containing protein	NA
UHGV-0177650_52	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0177650_52	Pfam	PF09643	YopX protein	YopX
UHGV-0177650_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0177650_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0177650_53	PHROG	phrog_7711	NA	unknown function
UHGV-0177650_53	eggNOG-mapper	768726.HMPREF9178_1075	NA	NA
UHGV-0177650_54	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0177650_54	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0177650_55	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0177650_57	PHROG	phrog_17690	NA	unknown function
UHGV-0177650_57	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0177650_58	PHROG	phrog_16304	NA	unknown function
UHGV-0177650_58	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0177650_58	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0177650_58	Pfam	PF19808	NA	DUF6291
UHGV-0177650_58	Structural annotation	PF19808	NA	NA
UHGV-0177650_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177650_59	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177650_59	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177650_59	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0177650_59	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177650_59	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177650_59	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177650_60	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0177650_60	UniRef90	UniRef90_A0A6N3H967	Bro-N domain-containing protein	NA
UHGV-0177650_60	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0177650_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177650_60	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0177650_60	COG	COG3617	Prophage antirepressor	NA
UHGV-0177650_60	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0177650_61	PHROG	phrog_398	NA	unknown function
UHGV-0177650_61	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0177650_61	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0177650_61	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0177650_61	Structural annotation	PF16784	NA	NA
UHGV-0177650_62	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177650_62	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0177650_62	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0177650_62	Pfam	PF06378	NA	DUF1071
UHGV-0177650_62	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0177650_64	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0177650_70	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0177650_70	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0177650_70	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0177650_70	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0177650_70	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177650_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177650_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177650_70	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177650_72	PHROG	phrog_14275	NA	unknown function
UHGV-0177650_72	UniRef90	UniRef90_A0A0V8QJ55	zinc_ribbon_2 domain-containing protein	NA
UHGV-0177650_72	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0177650_72	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0177650_72	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0177650_73	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177650_73	PHROG	phrog_95	integrase	integration and excision
UHGV-0177650_73	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0177650_73	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0177650_73	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177650_73	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177650_73	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177650_73	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA