UHGV-0177718

Genome information

Genome length 36,614 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177718
vOTU ID	vOTU-046632
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584257
BioSample	SAMN09781744
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length	36,614 bps
GC content	48.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.38%
Average CDS length	610.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177718_1	UniRef90	UniRef90_A0A2Z4GU98	Ribonuclease inhibitor	NA
UHGV-0177718_1	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0177718_2	eggNOG-mapper	1121413.JMKT01000014_gene2486	PFAM Lytic transglycosylase catalytic	NA
UHGV-0177718_2	Pfam	PF01476	LysM domain	LysM
UHGV-0177718_2	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0177718_3	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177718_3	UniRef90	UniRef90_A0A1Q6JI14	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0177718_3	eggNOG-mapper	1410628.JNKS01000054_gene544	NA	NA
UHGV-0177718_3	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177718_3	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177718_3	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0177718_5	PHROG	phrog_674	NA	unknown function
UHGV-0177718_5	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0177718_5	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0177718_5	Pfam	PF07083	NA	DUF1351
UHGV-0177718_5	Structural annotation	PF07083	NA	NA
UHGV-0177718_6	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0177718_6	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177718_6	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-0177718_6	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0177718_6	Pfam	PF03837	RecT family	RecT
UHGV-0177718_6	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0177718_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0177718_6	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0177718_7	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0177718_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0177718_7	UniRef90	UniRef90_A0A355KXN6	Lactamase_B domain-containing protein	NA
UHGV-0177718_7	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0177718_7	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0177718_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0177718_7	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0177718_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177718_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177718_8	UniRef90	UniRef90_A0A355JFL5	Single-stranded DNA-binding protein	NA
UHGV-0177718_8	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0177718_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177718_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177718_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177718_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177718_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0177718_12	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0177718_12	UniRef90	UniRef90_UPI0019113502	radical SAM protein	NA
UHGV-0177718_12	eggNOG-mapper	97138.C820_02863	NA	NA
UHGV-0177718_12	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0177718_12	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0177718_13	PHROG	phrog_32432	NA	unknown function
UHGV-0177718_13	eggNOG-mapper	1121342.AUCO01000012_gene1712	NA	NA
UHGV-0177718_16	PHROG	phrog_22543	NA	unknown function
UHGV-0177718_16	UniRef90	UniRef90_UPI00164C2CD3	zinc finger domain-containing protein	NA
UHGV-0177718_18	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177718_18	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0177718_18	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0177718_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177718_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177718_19	UniRef90	UniRef90_A0A1M5PWH2	Endodeoxyribonuclease RusA	NA
UHGV-0177718_19	eggNOG-mapper	1118057.CAGX01000020_gene1647	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0177718_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177718_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0177718_21	PHROG	phrog_7024	NA	unknown function
UHGV-0177718_21	eggNOG-mapper	1410624.JNKK01000017_gene1963	NA	NA
UHGV-0177718_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177718_22	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0177718_22	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0177718_22	Structural annotation	PF07374	NA	NA
UHGV-0177718_23	PHROG	phrog_2412	NA	unknown function
UHGV-0177718_23	UniRef90	UniRef90_UPI00148CF931	stress-induced protein	NA
UHGV-0177718_23	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0177718_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177718_24	PHROG	phrog_10250	NA	unknown function
UHGV-0177718_24	UniRef90	UniRef90_A0A8J6PA00	PBSX family phage terminase large subunit	NA
UHGV-0177718_24	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0177718_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177718_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0177718_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177718_24	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177718_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177718_25	UniRef90	UniRef90_A0A3A4W1Z3	Phage portal protein	NA
UHGV-0177718_25	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0177718_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177718_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177718_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177718_26	UniRef90	UniRef90_UPI001C64107B	phage minor capsid protein	NA
UHGV-0177718_26	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0177718_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177718_26	COG	COG2369	NA	NA
UHGV-0177718_26	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0177718_28	PHROG	phrog_27009	NA	unknown function
UHGV-0177718_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177718_29	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0177718_29	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0177718_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177718_29	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0177718_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-0177718_30	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0177718_30	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0177718_30	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0177718_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177718_32	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0177718_32	Structural annotation	PF05135	NA	NA
UHGV-0177718_33	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0177718_33	Pfam	PF20536	NA	DUF6751
UHGV-0177718_33	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0177718_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177718_34	UniRef90	UniRef90_F2JQ09	Minor capsid	NA
UHGV-0177718_34	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0177718_34	Structural annotation	PF11114	NA	NA
UHGV-0177718_35	PHROG	phrog_3266	tail completion	connector
UHGV-0177718_35	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0177718_35	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0177718_35	Structural annotation	PF12691	NA	NA
UHGV-0177718_36	PHROG	phrog_3099	NA	unknown function
UHGV-0177718_36	eggNOG-mapper	641112.ACOK01000073_gene2900	NA	NA
UHGV-0177718_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177718_37	PHROG	phrog_4450	NA	unknown function
UHGV-0177718_37	Pfam	PF20378	NA	DUF6673
UHGV-0177718_37	Structural annotation	PF20378	NA	NA
UHGV-0177718_38	PHROG	phrog_706	NA	unknown function
UHGV-0177718_38	UniRef90	UniRef90_UPI00189B4AF8	bacteriophage Gp15 family protein	NA
UHGV-0177718_38	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0177718_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177718_38	Structural annotation	PF06854	NA	NA
UHGV-0177718_39	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0177718_39	UniRef90	UniRef90_UPI001D06BDCE	phage tail tape measure protein	NA
UHGV-0177718_39	eggNOG-mapper	642492.Clole_0830	Phage tail tape measure protein, TP901 family	NA
UHGV-0177718_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0177718_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0177718_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0177718_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177718_41	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0177718_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0177718_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0177718_43	PHROG	phrog_19280	NA	unknown function
UHGV-0177718_43	UniRef90	UniRef90_UPI0018A03F6D	NA	NA
UHGV-0177718_43	Pfam	PF19789	NA	DUF6273
UHGV-0177718_43	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0177718_45	PHROG	phrog_134	NA	unknown function
UHGV-0177718_45	UniRef90	UniRef90_UPI001C00B7A3	XkdX family protein	NA
UHGV-0177718_45	eggNOG-mapper	1304866.K413DRAFT_0766	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0177718_45	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0177718_45	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0177718_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177718_46	PHROG	phrog_435	endolysin	lysis
UHGV-0177718_46	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177718_46	eggNOG-mapper	428125.CLOLEP_00744	Ami_3	NA
UHGV-0177718_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177718_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177718_46	Structural annotation	PF01520, PF09992, MF_00562, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0177718_47	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-0177718_47	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-0177718_49	KOfam	K14059	int; integrase	NA
UHGV-0177718_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0177718_49	UniRef90	UniRef90_UPI001897E1C8	site-specific integrase	NA
UHGV-0177718_49	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0177718_49	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0177718_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177718_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0177718_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0177718_50	eggNOG-mapper	476272.RUMHYD_01731	NA	NA
UHGV-0177718_50	Structural annotation	PF18768, MF_02066, NF011886, COG5010	NA	NA
UHGV-0177718_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0177718_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0177718_51	UniRef90	UniRef90_A0A542AKA2	Repressor LexA	NA
UHGV-0177718_51	eggNOG-mapper	1095750.HMPREF9970_1005	Helix-turn-helix domain	NA
UHGV-0177718_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177718_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0177718_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0177718_51	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0177718_53	Structural annotation	PF11614, NF006325, COG2847	NA	NA
UHGV-0177718_54	Structural annotation	PF10694	NA	NA
UHGV-0177718_56	Structural annotation	PF05339, NF041575, COG3655	NA	NA