UHGV-0177722

Genome information

Genome length 41,965 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177722
vOTU ID	vOTU-004969
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584261
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.53
Jumbo phage	No

Genome content
Genome length	41,965 bps
GC content	58.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.62%
Average CDS length	697.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177722_2	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0177722_2	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0177722_2	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0177722_2	Structural annotation	PF08271	NA	NA
UHGV-0177722_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0177722_3	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0177722_3	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0177722_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0177722_4	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0177722_4	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0177722_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0177722_4	Structural annotation	PF16677	NA	NA
UHGV-0177722_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177722_5	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0177722_5	UniRef90	UniRef90_UPI0006875436	phage terminase large subunit	NA
UHGV-0177722_5	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0177722_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177722_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177722_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177722_6	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0177722_6	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0177722_6	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0177722_7	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0177722_8	PHROG	phrog_37329	NA	unknown function
UHGV-0177722_8	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0177722_8	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0177722_8	Structural annotation	PF17744, PF16655, MF_01905, NF038116, COG3979, COG2033	NA	NA
UHGV-0177722_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0177722_10	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0177722_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177722_11	PHROG	phrog_13908	NA	unknown function
UHGV-0177722_11	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0177722_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0177722_12	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0177722_12	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0177722_12	Pfam	PF13252	NA	DUF4043
UHGV-0177722_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0177722_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177722_14	PHROG	phrog_12105	NA	unknown function
UHGV-0177722_14	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0177722_15	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0177722_15	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0177722_16	PHROG	phrog_22978	NA	unknown function
UHGV-0177722_16	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0177722_16	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0177722_16	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0177722_17	PHROG	phrog_33872	NA	unknown function
UHGV-0177722_17	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0177722_18	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0177722_19	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0177722_19	PHROG	phrog_819	tail protein	tail
UHGV-0177722_19	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0177722_19	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177722_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0177722_20	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0177722_20	eggNOG-mapper	742738.HMPREF9460_02534	NA	NA
UHGV-0177722_20	Pfam	PF19789	NA	DUF6273
UHGV-0177722_20	Structural annotation	PF19789	NA	NA
UHGV-0177722_22	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0177722_22	Structural annotation	PF10618	NA	NA
UHGV-0177722_26	PHROG	phrog_6918	holin	lysis
UHGV-0177722_26	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0177722_26	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0177722_26	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0177722_26	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0177722_27	PHROG	phrog_14030	NA	unknown function
UHGV-0177722_27	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0177722_27	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0177722_27	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0177722_28	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0177722_28	Structural annotation	PF10723	NA	NA
UHGV-0177722_32	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0177722_32	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0177722_33	KOfam	K14059	int; integrase	NA
UHGV-0177722_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0177722_33	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0177722_33	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0177722_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0177722_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177722_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177722_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177722_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0177722_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177722_34	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0177722_34	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0177722_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0177722_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177722_38	UniRef90	UniRef90_UPI001C02DD29	helix-turn-helix transcriptional regulator	NA
UHGV-0177722_38	eggNOG-mapper	1095749.HMPREF1052_2047	Peptidase S24-like	NA
UHGV-0177722_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177722_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177722_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177722_41	Structural annotation	PF10548	NA	NA
UHGV-0177722_43	Structural annotation	NF041247	NA	NA
UHGV-0177722_44	Structural annotation	PF05082	NA	NA
UHGV-0177722_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177722_47	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0177722_47	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0177722_47	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0177722_47	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0177722_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177722_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177722_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177722_47	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0177722_48	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0177722_48	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0177722_48	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0177722_48	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0177722_48	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0177722_50	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0177722_50	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0177722_50	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0177722_51	PHROG	phrog_3136	NA	unknown function
UHGV-0177722_51	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-0177722_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0177722_51	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0177722_52	PHROG	phrog_38832	NA	unknown function
UHGV-0177722_55	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177722_55	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0177722_55	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0177722_55	Pfam	PF06356	NA	DUF1064
UHGV-0177722_55	Structural annotation	PF06356	NA	NA
UHGV-0177722_56	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177722_56	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA