UHGV-0177723

Genome information

Genome length 35,769 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177723
vOTU ID	vOTU-004970
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584266
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.15
Jumbo phage	No

Genome content
Genome length	35,769 bps
GC content	44.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.34%
Average CDS length	603.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177723_4	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0177723_4	UniRef90	UniRef90_A0A414ZQZ4	NAD(P)-dependent oxidoreductase	NA
UHGV-0177723_4	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0177723_4	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0177723_4	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0177723_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177723_5	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0177723_5	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0177723_5	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA
UHGV-0177723_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177723_7	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0177723_7	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0177723_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177723_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177723_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0177723_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0177723_8	UniRef90	UniRef90_UPI00189F9B8A	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177723_8	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0177723_8	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0177723_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0177723_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0177723_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177723_8	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0177723_9	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177723_9	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-0177723_9	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0177723_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177723_9	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0177723_10	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177723_10	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-0177723_10	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0177723_10	Pfam	PF06356	NA	DUF1064
UHGV-0177723_10	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0177723_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177723_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177723_11	UniRef90	UniRef90_A0A2V2GHM3	Single-stranded DNA-binding protein	NA
UHGV-0177723_11	eggNOG-mapper	1042163.BRLA_c046430	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0177723_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177723_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177723_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177723_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177723_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177723_12	PHROG	phrog_1374	NA	unknown function
UHGV-0177723_12	UniRef90	UniRef90_A0A8F3EDV3	Membrane protein	NA
UHGV-0177723_12	eggNOG-mapper	1203606.HMPREF1526_01891	NA	NA
UHGV-0177723_12	Pfam	PF10269	Transmembrane Fragile-X-F protein	Tmemb_185A
UHGV-0177723_13	PHROG	phrog_774	NA	unknown function
UHGV-0177723_13	Structural annotation	PF10458	NA	NA
UHGV-0177723_15	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177723_15	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0177723_15	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0177723_15	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0177723_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177723_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177723_20	UniRef90	UniRef90_A0A316QMP7	HTH cro/C1-type domain-containing protein	NA
UHGV-0177723_20	eggNOG-mapper	1069534.LRC_08890	sequence-specific DNA binding	NA
UHGV-0177723_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177723_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177723_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177723_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177723_21	UniRef90	UniRef90_A0A354UNG6	Transcriptional regulator	NA
UHGV-0177723_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177723_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177723_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177723_23	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0177723_23	UniRef90	UniRef90_E6LJH8	HTH cro/C1-type domain-containing protein	NA
UHGV-0177723_23	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0177723_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177723_23	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0177723_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177723_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177723_24	UniRef90	UniRef90_X8H8X8	DNA-binding helix-turn-helix protein	NA
UHGV-0177723_24	eggNOG-mapper	1140001.I571_01121	Peptidase S24-like	NA
UHGV-0177723_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177723_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177723_24	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0177723_26	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0177723_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177723_26	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0177723_26	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0177723_27	KOfam	K14059	int; integrase	NA
UHGV-0177723_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0177723_27	UniRef90	UniRef90_A0A353EXX9	Tyr recombinase domain-containing protein	NA
UHGV-0177723_27	eggNOG-mapper	596330.HMPREF0628_1084	Belongs to the 'phage' integrase family	NA
UHGV-0177723_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0177723_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177723_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177723_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0177723_31	Structural annotation	PF10651	NA	NA
UHGV-0177723_32	Structural annotation	PF07041	NA	NA
UHGV-0177723_33	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0177723_33	COG	COG4964	Flp pilus assembly protein, secretin CpaC	NA
UHGV-0177723_33	Structural annotation	PF10651	NA	NA
UHGV-0177723_34	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0177723_35	Structural annotation	PF09097, TIGR02126	NA	NA
UHGV-0177723_37	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-0177723_38	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-0177723_39	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-0177723_41	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0177723_41	Structural annotation	PF05065, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177723_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177723_43	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-0177723_43	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-0177723_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177723_43	COG	COG2369	NA	NA
UHGV-0177723_43	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0177723_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177723_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0177723_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177723_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0177723_45	UniRef90	UniRef90_UPI0008D8FA41	PBSX family phage terminase large subunit	NA
UHGV-0177723_45	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0177723_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0177723_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177723_45	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0177723_46	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0177723_46	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0177723_46	UniRef90	UniRef90_E5BHZ1	Terminase small subunit	NA
UHGV-0177723_46	eggNOG-mapper	1123405.AUMM01000017_gene2713	Terminase, small subunit	NA
UHGV-0177723_46	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177723_46	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0177723_46	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0177723_51	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0177723_51	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0177723_51	eggNOG-mapper	40631.O64365_BPN15	NA	NA
UHGV-0177723_51	Pfam	PF14359	NA	DUF4406
UHGV-0177723_51	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0177723_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0177723_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177723_52	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0177723_52	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0177723_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0177723_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177723_52	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0177723_53	PHROG	phrog_3136	NA	unknown function
UHGV-0177723_53	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0177723_53	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0177723_54	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0177723_54	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0177723_54	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA