UHGV-0177786

Genome information

Genome length 33,958 bps

CDS count 43

Completeness 83.35% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177786
vOTU ID	vOTU-028984
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576604
BioSample	SAMN07501052
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.7
Jumbo phage	No

Genome content
Genome length	33,958 bps
GC content	49.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.37%
Average CDS length	715.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177786_1	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0177786_1	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0177786_1	UniRef90	UniRef90_A0A482J6M5	DNA-binding transcriptional regulator Cro	NA
UHGV-0177786_1	eggNOG-mapper	1115515.EV102420_11_00450	DNA-binding transcriptional regulator Cro	NA
UHGV-0177786_1	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0177786_1	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0177786_1	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0177786_2	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0177786_2	eggNOG-mapper	1147158.K7PJS5_9CAUD	Phage regulatory protein CII (CP76)	NA
UHGV-0177786_2	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0177786_2	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0177786_2	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0177786_3	PHROG	phrog_1170	NA	unknown function
UHGV-0177786_4	PHROG	phrog_22793	NA	unknown function
UHGV-0177786_4	UniRef90	UniRef90_A0A1M5VL08	Phg_2220_C domain-containing protein	NA
UHGV-0177786_4	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0177786_4	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0177786_4	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0177786_4	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0177786_4	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0177786_5	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0177786_5	UniRef90	UniRef90_UPI001010CDE4	PerC family transcriptional regulator	NA
UHGV-0177786_5	eggNOG-mapper	1399774.JDWH01000016_gene3450	PerC transcriptional activator	NA
UHGV-0177786_5	Structural annotation	PF07106, PF06069, MF_01909, NF012168, NF033650, COG5625	NA	NA
UHGV-0177786_6	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0177786_6	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0177786_6	UniRef90	UniRef90_A0A2J0QV16	DNA methyltransferase	NA
UHGV-0177786_6	eggNOG-mapper	1399774.JDWH01000016_gene3449	Belongs to the MT-A70-like family	NA
UHGV-0177786_6	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0177786_6	Pfam	PF05063	MT-A70	MT-A70
UHGV-0177786_6	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0177786_6	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0177786_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0177786_7	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0177786_7	UniRef90	UniRef90_A0A8F8BMG5	LexA family transcriptional regulator	NA
UHGV-0177786_7	eggNOG-mapper	1399774.JDWH01000016_gene3447	LexA DNA binding domain	NA
UHGV-0177786_7	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0177786_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0177786_7	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0177786_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177786_8	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0177786_8	UniRef90	UniRef90_UPI0018C2B030	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177786_8	eggNOG-mapper	1147158.K7PKN5_9CAUD	magnesium ion binding	NA
UHGV-0177786_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177786_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0177786_9	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177786_9	UniRef90	UniRef90_A0A7G3EXZ6	HNHc domain-containing protein	NA
UHGV-0177786_9	eggNOG-mapper	1147158.K7PJS6_9CAUD	NA	NA
UHGV-0177786_9	Pfam	PF06147	NA	DUF968
UHGV-0177786_9	Structural annotation	PF06147	NA	NA
UHGV-0177786_10	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0177786_10	UniRef90	UniRef90_A0A1L4PH93	Antitermination protein	NA
UHGV-0177786_10	eggNOG-mapper	1399774.JDWH01000016_gene3443	NA	NA
UHGV-0177786_10	Pfam	PF06576	NA	DUF1133
UHGV-0177786_10	Structural annotation	PF06576	NA	NA
UHGV-0177786_12	PHROG	phrog_198	holin	lysis
UHGV-0177786_12	UniRef90	UniRef90_UPI001C643637	phage holin family protein	NA
UHGV-0177786_12	eggNOG-mapper	667121.ET1_08_00980	Putative phage holin	NA
UHGV-0177786_12	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0177786_12	Structural annotation	PF16931	NA	NA
UHGV-0177786_13	PHROG	phrog_217	holin	lysis
UHGV-0177786_13	UniRef90	UniRef90_A0A7Z8BXT8	Membrane protein	NA
UHGV-0177786_13	eggNOG-mapper	393305.YE1814	Putative 3TM holin, Phage_holin_3	NA
UHGV-0177786_13	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0177786_14	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0177786_14	PHROG	phrog_181	endolysin	lysis
UHGV-0177786_14	UniRef90	UniRef90_A0A2J0Q0C3	Endolysin	NA
UHGV-0177786_14	eggNOG-mapper	1399774.JDWH01000016_gene3440	Chitinase class I	NA
UHGV-0177786_14	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0177786_14	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0177786_14	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0177786_15	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0177786_15	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0177786_15	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0177786_16	PHROG	phrog_13652	NA	unknown function
UHGV-0177786_17	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0177786_17	UniRef90	UniRef90_A0A8B6A0D1	Glycosyltransferase family 2 protein	NA
UHGV-0177786_17	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0177786_17	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0177786_17	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0177786_19	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0177786_19	eggNOG-mapper	1399774.JDWH01000046_gene1349	Glycosyl transferase, family 2	NA
UHGV-0177786_19	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0177786_19	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0177786_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0177786_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177786_20	UniRef90	UniRef90_A0A6X9BD36	HNH endonuclease	NA
UHGV-0177786_20	eggNOG-mapper	1147150.K7PHK9_9CAUD	HNH endonuclease	NA
UHGV-0177786_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0177786_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0177786_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0177786_21	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0177786_21	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0177786_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177786_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0177786_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177786_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177786_22	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0177786_22	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0177786_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177786_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177786_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0177786_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177786_23	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-0177786_23	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-0177786_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177786_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177786_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177786_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0177786_24	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0177786_24	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0177786_24	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-0177786_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0177786_24	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0177786_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177786_25	UniRef90	UniRef90_A0A133LP05	Phage major capsid protein, HK97 family	NA
UHGV-0177786_25	eggNOG-mapper	1399774.JDWH01000035_gene2224	capsid protein	NA
UHGV-0177786_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177786_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177786_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177786_25	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0177786_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0177786_26	UniRef90	UniRef90_A0A837F2Q3	NA	NA
UHGV-0177786_26	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-0177786_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0177786_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0177786_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177786_27	PHROG	phrog_2612	NA	unknown function
UHGV-0177786_27	UniRef90	UniRef90_A0A198GFG7	NA	NA
UHGV-0177786_27	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0177786_28	PHROG	phrog_25	head closure Hc1	connector
UHGV-0177786_28	UniRef90	UniRef90_A0A0F1A6R8	Head-tail adaptor protein	NA
UHGV-0177786_28	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0177786_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0177786_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177786_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177786_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177786_29	UniRef90	UniRef90_A0A5U1N4K2	HK97 gp10 family phage protein	NA
UHGV-0177786_29	eggNOG-mapper	10742.Q9MCV1_BPHK0	exonuclease activity	NA
UHGV-0177786_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177786_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0177786_29	Structural annotation	TIGR01725	NA	NA
UHGV-0177786_30	PHROG	phrog_78	tail terminator	connector
UHGV-0177786_30	UniRef90	UniRef90_A0A7Z8C0A1	NA	NA
UHGV-0177786_30	eggNOG-mapper	1115515.EV102420_11_00120	NA	NA
UHGV-0177786_30	Pfam	PF11367	NA	DUF3168
UHGV-0177786_30	Structural annotation	PF11367	NA	NA
UHGV-0177786_31	PHROG	phrog_158	major tail protein	tail
UHGV-0177786_31	UniRef90	UniRef90_A0A0F1A3P5	Phage major tail protein	NA
UHGV-0177786_31	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0177786_31	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0177786_31	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0177786_32	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0177786_32	UniRef90	UniRef90_A0A7Z8BZU8	Phage tail protein	NA
UHGV-0177786_32	eggNOG-mapper	1115515.EV102420_11_00100	Phage tail assembly chaperone, TAC	NA
UHGV-0177786_32	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0177786_32	Structural annotation	PF16459	NA	NA
UHGV-0177786_33	PHROG	phrog_5297	tail protein	tail
UHGV-0177786_33	UniRef90	UniRef90_A0A3U1NZP7	Phage tail protein	NA
UHGV-0177786_33	eggNOG-mapper	10742.Q9MCU7_BPHK0	NA	NA
UHGV-0177786_34	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0177786_34	UniRef90	UniRef90_A0A7Z8BZT9	Phage tail tape measure protein	NA
UHGV-0177786_34	eggNOG-mapper	640513.Entas_3068	lytic transglycosylase activity	NA
UHGV-0177786_34	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0177786_34	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0177786_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0177786_35	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0177786_35	UniRef90	UniRef90_A0A7Z8C0G4	Membrane protein	NA
UHGV-0177786_35	eggNOG-mapper	158822.LH89_20565	NA	NA
UHGV-0177786_35	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0177786_36	PHROG	phrog_396	minor tail protein	tail
UHGV-0177786_36	UniRef90	UniRef90_A0A2K8QP67	ArsR family transcriptional regulator	NA
UHGV-0177786_36	eggNOG-mapper	158822.LH89_20570	NA	NA
UHGV-0177786_36	Pfam	PF08875	NA	DUF1833
UHGV-0177786_36	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0177786_37	PHROG	phrog_329	minor tail protein	tail
UHGV-0177786_37	UniRef90	UniRef90_A0A3R1CEE4	Nitrite transporter	NA
UHGV-0177786_37	eggNOG-mapper	158822.LH89_20575	NA	NA
UHGV-0177786_37	Structural annotation	TIGR02219	NA	NA
UHGV-0177786_38	PHROG	phrog_469	tail protein	tail
UHGV-0177786_38	UniRef90	UniRef90_A0A7Z8C246	Kinase	NA
UHGV-0177786_38	eggNOG-mapper	158822.LH89_20580	cellulase activity	NA
UHGV-0177786_38	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0177786_38	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0177786_38	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0177786_38	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0177786_39	PHROG	phrog_21878	tail fiber protein	tail
UHGV-0177786_39	UniRef90	UniRef90_A0A7Z8BZU6	SGNH/GDSL hydrolase family protein	NA
UHGV-0177786_39	eggNOG-mapper	1054461.G0XNW5_9CAUD	NA	NA
UHGV-0177786_39	Pfam	PF18668	Tail spike TSP1/Gp66 receptor binding N-terminal domain	Tail_spike_N
UHGV-0177786_39	Pfam	PF21562	G7C, Tail fiber protein, domain 3	Gp63_3rd_G7C
UHGV-0177786_40	PHROG	phrog_4829	GtrC-like O-antigen conversion translocase	moron, auxiliary metabolic gene and host takeover
UHGV-0177786_40	UniRef90	UniRef90_UPI0010352ECC	glucosyltransferase domain-containing protein	NA
UHGV-0177786_40	eggNOG-mapper	498211.CJA_3449	membrane	NA
UHGV-0177786_40	Pfam	PF14264	Glucosyl transferase GtrII	Glucos_trans_II
UHGV-0177786_40	Structural annotation	PF14264, TIGR03663, COG5305	NA	NA
UHGV-0177786_41	KOfam	K20534	gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]	NA
UHGV-0177786_41	PHROG	phrog_34335	NA	unknown function
UHGV-0177786_41	UniRef90	UniRef90_A0A1E7Z2K3	Bactoprenol glucosyl transferase	NA
UHGV-0177786_41	eggNOG-mapper	469595.CSAG_01790	Glycosyl transferase family 2	NA
UHGV-0177786_41	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0177786_41	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0177786_41	Structural annotation	PF00535, MF_01164, NF007986, COG1215	NA	NA
UHGV-0177786_42	PHROG	phrog_3893	NA	unknown function
UHGV-0177786_42	eggNOG-mapper	640513.Entas_3061	NA	NA
UHGV-0177786_43	PHROG	phrog_3469	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0177786_43	eggNOG-mapper	716541.ECL_01351	NA	NA
UHGV-0177786_43	Structural annotation	PF16452, MF_00015, NF007621, COG1974	NA	NA