UHGV-0177790

Genome information

Genome length 37,842 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9471

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177790
vOTU ID	vOTU-046636
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577828
BioSample	SAMN07501133
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9471
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.73
Jumbo phage	No

Genome content
Genome length	37,842 bps
GC content	25.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	82.05%
Average CDS length	575.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177790_4	UniRef90	UniRef90_UPI000AABEC73	LLM class flavin-dependent oxidoreductase	NA
UHGV-0177790_4	eggNOG-mapper	1499683.CCFF01000017_gene2117	NA	NA
UHGV-0177790_4	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0177790_6	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177790_6	UniRef90	UniRef90_B1BUD7	HNH endonuclease domain protein	NA
UHGV-0177790_6	eggNOG-mapper	1121396.KB893061_gene2719	PFAM HNH endonuclease	NA
UHGV-0177790_6	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0177790_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177790_9	UniRef90	UniRef90_UPI0013E3E495	helix-turn-helix domain-containing protein	NA
UHGV-0177790_9	eggNOG-mapper	748727.CLJU_c16610	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177790_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177790_10	UniRef90	UniRef90_A0A336QQH5	DNA-binding protein	NA
UHGV-0177790_12	PHROG	phrog_31036	NA	unknown function
UHGV-0177790_13	UniRef90	UniRef90_UPI001A1C74B1	helix-turn-helix domain-containing protein	NA
UHGV-0177790_13	eggNOG-mapper	871968.DESME_09010	NA	NA
UHGV-0177790_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177790_14	PHROG	phrog_8308	NA	unknown function
UHGV-0177790_14	UniRef90	UniRef90_A0A336QRZ7	Phage related protein	NA
UHGV-0177790_14	eggNOG-mapper	871968.DESME_09005	NA	NA
UHGV-0177790_14	Structural annotation	PF05183	NA	NA
UHGV-0177790_19	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0177790_19	PHROG	phrog_216	integrase	integration and excision
UHGV-0177790_19	UniRef90	UniRef90_A0A336QTX1	Tyrosine recombinase XerD	NA
UHGV-0177790_19	eggNOG-mapper	1540257.JQMW01000009_gene3366	Phage integrase family	NA
UHGV-0177790_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177790_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0177790_19	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0177790_21	PHROG	phrog_1758	acetyltransferase	other
UHGV-0177790_21	eggNOG-mapper	469618.FVAG_02009	NA	NA
UHGV-0177790_21	Structural annotation	PF02474, MF_02210, NF007025, COG0456	NA	NA
UHGV-0177790_22	eggNOG-mapper	1443122.Z958_11870	NA	NA
UHGV-0177790_23	eggNOG-mapper	1117108.PAALTS15_05803	NA	NA
UHGV-0177790_24	PHROG	phrog_12550	NA	unknown function
UHGV-0177790_24	eggNOG-mapper	1031288.AXAA01000059_gene1755	NA	NA
UHGV-0177790_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177790_25	UniRef90	UniRef90_A0A2X2Y8J5	HNH endonuclease domain-containing protein	NA
UHGV-0177790_25	eggNOG-mapper	632245.CLP_2621	HNH endonuclease	NA
UHGV-0177790_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177790_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0177790_26	UniRef90	UniRef90_A0A2X2Y664	Phage terminase, small subunit, P27 family	NA
UHGV-0177790_26	eggNOG-mapper	632245.CLP_2620	Phage terminase, small subunit	NA
UHGV-0177790_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177790_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0177790_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0177790_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177790_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177790_27	UniRef90	UniRef90_A0A2X2YH99	Terminase	NA
UHGV-0177790_27	eggNOG-mapper	394503.Ccel_2960	Terminase	NA
UHGV-0177790_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177790_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177790_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177790_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0177790_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177790_28	UniRef90	UniRef90_A0A2X2Y6X8	Phage portal protein, HK97 family	NA
UHGV-0177790_28	eggNOG-mapper	394503.Ccel_2959	Phage portal protein, HK97 family	NA
UHGV-0177790_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177790_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177790_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177790_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177790_29	KOfam	K06904	NA	NA
UHGV-0177790_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0177790_29	UniRef90	UniRef90_A0A2X2YAE5	Phage phi-C31 gp35-like protein	NA
UHGV-0177790_29	eggNOG-mapper	536233.CLO_2523	Phage prohead protease, HK97 family	NA
UHGV-0177790_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0177790_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0177790_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0177790_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0177790_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177790_30	UniRef90	UniRef90_A0A2X2XW13	Phage major capsid protein, HK97 family	NA
UHGV-0177790_30	eggNOG-mapper	1262449.CP6013_1042	Phage major capsid protein, HK97 family	NA
UHGV-0177790_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177790_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177790_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177790_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177790_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0177790_31	UniRef90	UniRef90_A0A2X2Y939	NA	NA
UHGV-0177790_31	eggNOG-mapper	1195236.CTER_5110	Phage gp6-like head-tail connector protein	NA
UHGV-0177790_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0177790_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0177790_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177790_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0177790_32	UniRef90	UniRef90_A0A336QUV4	Putative phage head-tail adaptor	NA
UHGV-0177790_32	eggNOG-mapper	1292035.H476_3504	Phage head-tail joining protein	NA
UHGV-0177790_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0177790_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177790_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0177790_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177790_33	UniRef90	UniRef90_A0A2X3AC40	Phage protein, HK97 gp10 family	NA
UHGV-0177790_33	eggNOG-mapper	536232.CLM_2051	NA	NA
UHGV-0177790_34	PHROG	phrog_78	tail terminator	connector
UHGV-0177790_34	UniRef90	UniRef90_UPI0018D773FF	prohead protease	NA
UHGV-0177790_34	eggNOG-mapper	536232.CLM_2050	NA	NA
UHGV-0177790_34	Structural annotation	PF05657	NA	NA
UHGV-0177790_35	PHROG	phrog_88	major tail protein	tail
UHGV-0177790_35	UniRef90	UniRef90_A0A2X2Y8I3	Phage major tail protein, phi13 family subfamily	NA
UHGV-0177790_35	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0177790_35	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0177790_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0177790_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0177790_36	PHROG	phrog_16952	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0177790_36	UniRef90	UniRef90_UPI001CCF930E	RNA polymerase subunit sigma	NA
UHGV-0177790_36	eggNOG-mapper	1391647.AVSV01000039_gene1106	NA	NA
UHGV-0177790_37	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0177790_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0177790_37	UniRef90	UniRef90_UPI001CCBF147	phage tail tape measure protein	NA
UHGV-0177790_37	eggNOG-mapper	396359.Q0SPL2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0177790_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0177790_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0177790_38	PHROG	phrog_15170	NA	unknown function
UHGV-0177790_39	UniRef90	UniRef90_A0A822UM99	LprI domain-containing protein	NA
UHGV-0177790_39	Pfam	PF07007	Lysozyme inhibitor LprI	LprI
UHGV-0177790_40	PHROG	phrog_2727	NA	unknown function
UHGV-0177790_40	UniRef90	UniRef90_UPI001A30260E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0177790_40	Structural annotation	PF14056, COG1321	NA	NA
UHGV-0177790_41	KOfam	K10947	padR; PadR family transcriptional regulator, regulatory protein PadR	NA
UHGV-0177790_41	UniRef90	UniRef90_Q0SV74	Transcriptional regulator, PadR family	NA
UHGV-0177790_41	eggNOG-mapper	1262449.CP6013_2602	Transcriptional regulator	NA
UHGV-0177790_41	Pfam	PF03551	Transcriptional regulator PadR-like family	PadR
UHGV-0177790_41	COG	COG1695	DNA-binding transcriptional regulator, PadR family	NA
UHGV-0177790_42	eggNOG-mapper	1121289.JHVL01000064_gene301	PFAM VanZ	NA
UHGV-0177790_42	COG	COG4767	Glycopeptide antibiotics resistance protein	NA
UHGV-0177790_43	KOfam	K11057	cpb2; beta2-toxin	NA
UHGV-0177790_43	UniRef90	UniRef90_G5DSD0	Beta2-toxin	NA
UHGV-0177790_45	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0177790_45	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177790_45	UniRef90	UniRef90_A0A6M1WIP8	ParM/StbA family protein	NA
UHGV-0177790_45	eggNOG-mapper	431943.CKL_4044	Heat shock 70 kDa protein	NA
UHGV-0177790_45	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0177790_45	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0177790_45	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0177790_46	KOfam	K05984	cho; excinuclease Cho [EC:3.1.25.-]	NA
UHGV-0177790_46	UniRef90	UniRef90_UPI001105AF65	GIY-YIG nuclease family protein	NA
UHGV-0177790_46	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0177790_46	COG	COG0322	Excinuclease UvrABC, nuclease subunit	NA
UHGV-0177790_49	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177790_49	UniRef90	UniRef90_UPI000D709A61	DnaD domain protein	NA
UHGV-0177790_49	eggNOG-mapper	457412.RSAG_04733	NA	NA
UHGV-0177790_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0177790_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0177790_49	Structural annotation	PF06970	NA	NA
UHGV-0177790_50	PHROG	phrog_11376	NA	unknown function
UHGV-0177790_51	PHROG	phrog_11376	NA	unknown function
UHGV-0177790_52	UniRef90	UniRef90_A0A336QY45	HTH cro/C1-type domain-containing protein	NA
UHGV-0177790_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177790_53	UniRef90	UniRef90_UPI0004826593	zinc ribbon domain-containing protein	NA
UHGV-0177790_53	eggNOG-mapper	1052684.PPM_1469	response to antibiotic	NA
UHGV-0177790_53	COG	COG4640	NA	NA