UHGV-0177848

Genome information

Genome length 31,732 bps

CDS count 55

Completeness 85.51% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177848
vOTU ID	vOTU-028988
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588523
BioSample	SAMN09781748
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.16
Jumbo phage	No

Genome content
Genome length	31,732 bps
GC content	55.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.54%
Average CDS length	549.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177848_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0177848_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177848_1	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0177848_1	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177848_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177848_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177848_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177848_3	PHROG	phrog_5610	NA	unknown function
UHGV-0177848_3	eggNOG-mapper	655812.HMPREF0061_0218	NA	NA
UHGV-0177848_3	Pfam	PF16729	NA	DUF5067
UHGV-0177848_3	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0177848_4	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0177848_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177848_4	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177848_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177848_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0177848_5	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0177848_5	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0177848_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177848_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0177848_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177848_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177848_5	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0177848_6	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0177848_7	Structural annotation	PF12510	NA	NA
UHGV-0177848_8	PHROG	phrog_20016	NA	unknown function
UHGV-0177848_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177848_8	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0177848_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177848_9	PHROG	phrog_16490	NA	unknown function
UHGV-0177848_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177848_10	PHROG	phrog_22984	NA	unknown function
UHGV-0177848_11	PHROG	phrog_21718	NA	unknown function
UHGV-0177848_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177848_12	PHROG	phrog_3754	NA	unknown function
UHGV-0177848_12	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0177848_13	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0177848_14	PHROG	phrog_608	holin	lysis
UHGV-0177848_14	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0177848_14	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0177848_14	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0177848_14	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0177848_15	PHROG	phrog_37604	NA	unknown function
UHGV-0177848_15	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0177848_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0177848_16	PHROG	phrog_291	endolysin	lysis
UHGV-0177848_16	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0177848_16	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0177848_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177848_16	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0177848_16	COG	COG1388	LysM repeat	NA
UHGV-0177848_16	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0177848_18	PHROG	phrog_9534	head protein	head and packaging
UHGV-0177848_18	UniRef90	UniRef90_A7GI58	Putative phage structural protein	NA
UHGV-0177848_18	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0177848_18	Structural annotation	PF20747	NA	NA
UHGV-0177848_19	PHROG	phrog_538	minor tail protein	tail
UHGV-0177848_19	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0177848_19	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0177848_19	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0177848_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177848_20	PHROG	phrog_36410	NA	unknown function
UHGV-0177848_20	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0177848_20	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0177848_20	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0177848_21	PHROG	phrog_23464	NA	unknown function
UHGV-0177848_21	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0177848_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0177848_21	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0177848_23	PHROG	phrog_885	major tail protein	tail
UHGV-0177848_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0177848_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0177848_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0177848_24	Structural annotation	PF11367	NA	NA
UHGV-0177848_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0177848_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177848_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177848_27	PHROG	phrog_267	major head protein	head and packaging
UHGV-0177848_27	UniRef90	UniRef90_UPI001F06E68A	phage capsid protein	NA
UHGV-0177848_27	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0177848_27	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0177848_27	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177848_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0177848_28	Structural annotation	PF06810	NA	NA
UHGV-0177848_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177848_29	UniRef90	UniRef90_UPI000691EB78	HK97 gp10 family phage protein	NA
UHGV-0177848_29	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0177848_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177848_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0177848_30	PHROG	phrog_35328	NA	unknown function
UHGV-0177848_31	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0177848_31	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0177848_31	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-0177848_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0177848_31	COG	COG2369	NA	NA
UHGV-0177848_31	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0177848_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0177848_32	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0177848_32	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177848_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177848_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0177848_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0177848_33	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0177848_33	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0177848_33	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0177848_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0177848_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0177848_34	UniRef90	UniRef90_UPI001379A213	terminase small subunit	NA
UHGV-0177848_34	eggNOG-mapper	1347392.CCEZ01000005_gene1228	Terminase small subunit	NA
UHGV-0177848_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177848_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0177848_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0177848_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177848_35	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0177848_35	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0177848_45	PHROG	phrog_22543	NA	unknown function
UHGV-0177848_46	Pfam	PF04448	NA	DUF551
UHGV-0177848_46	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0177848_47	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177848_47	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-0177848_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177848_47	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0177848_47	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0177848_47	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177848_49	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177848_49	UniRef90	UniRef90_UPI0006D56AE3	AP2 domain-containing protein	NA
UHGV-0177848_49	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0177848_49	Structural annotation	PF17375	NA	NA
UHGV-0177848_50	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177848_50	UniRef90	UniRef90_UPI001F1BE169	Holliday junction endonuclease	NA
UHGV-0177848_50	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0177848_50	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0177848_50	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0177848_51	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0177848_51	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0177848_51	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0177848_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0177848_51	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0177848_53	PHROG	phrog_18306	NA	unknown function
UHGV-0177848_53	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0177848_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177848_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177848_54	UniRef90	UniRef90_A0A3A9ED12	ATP-binding protein	NA
UHGV-0177848_54	eggNOG-mapper	1121333.JMLH01000056_gene1758	IstB-like ATP binding protein	NA
UHGV-0177848_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0177848_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0177848_54	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0177848_55	PHROG	phrog_15768	NA	unknown function
UHGV-0177848_55	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0177848_55	COG	COG3935	DNA replication protein DnaD	NA