UHGV-0177891

Genome information

Genome length 31,851 bps

CDS count 46

Completeness 94.96% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177891
vOTU ID	vOTU-075358
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577689
BioSample	SAMN07501177
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.04
Jumbo phage	No

Genome content
Genome length	31,851 bps
GC content	39.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.14%
Average CDS length	641.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177891_1	PHROG	phrog_1529	NA	unknown function
UHGV-0177891_1	UniRef90	UniRef90_A0A1X0WPY5	DNA-binding protein	NA
UHGV-0177891_1	eggNOG-mapper	888049.HMPREF8578_0245	NA	NA
UHGV-0177891_1	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0177891_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177891_2	PHROG	phrog_1110	endolysin	lysis
UHGV-0177891_2	UniRef90	UniRef90_X8KD37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177891_2	eggNOG-mapper	1282664.H354_06746	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177891_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0177891_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0177891_2	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0177891_2	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-0177891_3	PHROG	phrog_199	holin	lysis
UHGV-0177891_3	UniRef90	UniRef90_A0A1S5SD95	Holin 1	NA
UHGV-0177891_3	eggNOG-mapper	413066.A1EAB5_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0177891_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0177891_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0177891_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0177891_4	PHROG	phrog_1554	NA	unknown function
UHGV-0177891_4	eggNOG-mapper	1095737.HMPREF1110_1749	NA	NA
UHGV-0177891_4	Structural annotation	PF07104	NA	NA
UHGV-0177891_5	PHROG	phrog_1137	NA	unknown function
UHGV-0177891_5	UniRef90	UniRef90_A0A1X0WPX7	Dihydrodipicolinate reductase	NA
UHGV-0177891_5	eggNOG-mapper	996306.SSUR61_0137	NA	NA
UHGV-0177891_6	PHROG	phrog_1210	PblB-type receptor binding	other
UHGV-0177891_6	UniRef90	UniRef90_UPI0018980067	tail fiber domain-containing protein	NA
UHGV-0177891_6	eggNOG-mapper	1297534.CAUJ01000005_gene170	Phage minor structural protein	NA
UHGV-0177891_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0177891_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177891_6	COG	COG1511	NA	NA
UHGV-0177891_6	Structural annotation	PF14594, PF00629, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0177891_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177891_7	UniRef90	UniRef90_A0A1F0TGE5	Phage tail protein	NA
UHGV-0177891_7	eggNOG-mapper	888049.HMPREF8578_0707	NA	NA
UHGV-0177891_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0177891_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0177891_8	UniRef90	UniRef90_A0A0F3HL36	Chromosome partition protein Smc	NA
UHGV-0177891_8	eggNOG-mapper	888049.HMPREF8578_0706	Phage tail tape measure protein	NA
UHGV-0177891_8	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0177891_8	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0177891_9	PHROG	phrog_709	NA	unknown function
UHGV-0177891_9	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-0177891_9	eggNOG-mapper	888049.HMPREF8578_0705	NA	NA
UHGV-0177891_9	Structural annotation	PF11836	NA	NA
UHGV-0177891_10	PHROG	phrog_88	major tail protein	tail
UHGV-0177891_10	UniRef90	UniRef90_F5W033	Phage major tail protein, phi13 family	NA
UHGV-0177891_10	eggNOG-mapper	644007.C5J969_9CAUD	NA	NA
UHGV-0177891_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0177891_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0177891_11	PHROG	phrog_78	tail terminator	connector
UHGV-0177891_11	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-0177891_11	eggNOG-mapper	644007.C5J968_9CAUD	aminopeptidase activity	NA
UHGV-0177891_11	Structural annotation	PF20765	NA	NA
UHGV-0177891_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0177891_12	UniRef90	UniRef90_UPI00195EB731	HK97 gp10 family phage protein	NA
UHGV-0177891_12	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-0177891_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0177891_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0177891_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0177891_13	UniRef90	UniRef90_UPI000B58A5F0	phage head closure protein	NA
UHGV-0177891_13	eggNOG-mapper	644007.C5J966_9CAUD	NA	NA
UHGV-0177891_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177891_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177891_14	PHROG	phrog_2550	NA	unknown function
UHGV-0177891_14	UniRef90	UniRef90_A0A081R3E6	Prophage pi2 protein 35	NA
UHGV-0177891_14	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0177891_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177891_15	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0177891_15	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-0177891_15	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-0177891_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177891_16	UniRef90	UniRef90_E6KKD3	Phage major capsid protein, HK97 family	NA
UHGV-0177891_16	eggNOG-mapper	888049.HMPREF8578_0698	capsid protein	NA
UHGV-0177891_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177891_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177891_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177891_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177891_17	KOfam	K06904	NA	NA
UHGV-0177891_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0177891_17	UniRef90	UniRef90_E6KKD2	Phage prohead protease, HK97 family	NA
UHGV-0177891_17	eggNOG-mapper	644007.C5J962_9CAUD	peptidase activity	NA
UHGV-0177891_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0177891_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0177891_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0177891_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177891_18	UniRef90	UniRef90_UPI001CBC02E6	phage portal protein	NA
UHGV-0177891_18	eggNOG-mapper	888049.HMPREF8578_0696	Phage portal protein	NA
UHGV-0177891_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177891_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177891_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0177891_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0177891_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177891_19	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-0177891_19	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-0177891_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177891_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177891_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177891_19	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0177891_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0177891_20	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-0177891_20	eggNOG-mapper	1005705.HMPREF9967_1038	Phage terminase, small subunit	NA
UHGV-0177891_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0177891_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0177891_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177891_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177891_21	UniRef90	UniRef90_A0A062WSH4	Bacteriophage nuclease	NA
UHGV-0177891_21	eggNOG-mapper	888049.HMPREF8578_0692	endonuclease activity	NA
UHGV-0177891_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0177891_22	PHROG	phrog_5627	NA	unknown function
UHGV-0177891_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0177891_23	PHROG	phrog_216	integrase	integration and excision
UHGV-0177891_23	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-0177891_23	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-0177891_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177891_23	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0177891_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177891_24	UniRef90	UniRef90_E6KKC4	Phage transcriptional regulator, RinA family	NA
UHGV-0177891_24	eggNOG-mapper	1123315.AUIP01000003_gene229	Transcriptional regulator, RinA family	NA
UHGV-0177891_24	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0177891_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0177891_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0177891_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177891_25	UniRef90	UniRef90_A0A0F3HHX3	HTH cro/C1-type domain-containing protein	NA
UHGV-0177891_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177891_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177891_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0177891_26	PHROG	phrog_7626	NA	unknown function
UHGV-0177891_27	PHROG	phrog_884	NA	unknown function
UHGV-0177891_27	UniRef90	UniRef90_W1USP4	Gp27 family protein	NA
UHGV-0177891_27	eggNOG-mapper	585203.SMSK564_1298	NA	NA
UHGV-0177891_27	Pfam	PF07116	NA	DUF1372
UHGV-0177891_27	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0177891_28	Structural annotation	PF07878, NF010302, COG3609	NA	NA
UHGV-0177891_29	PHROG	phrog_121	NA	unknown function
UHGV-0177891_29	UniRef90	UniRef90_A0A3P1VHE1	NA	NA
UHGV-0177891_29	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0177891_29	Pfam	PF07852	NA	DUF1642
UHGV-0177891_29	Structural annotation	PF07852	NA	NA
UHGV-0177891_31	PHROG	phrog_7484	NA	unknown function
UHGV-0177891_31	UniRef90	UniRef90_Q7Y4K1	Gp23	NA
UHGV-0177891_31	eggNOG-mapper	997830.HMPREF1124_0583	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0177891_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0177891_31	Structural annotation	PF14284	NA	NA
UHGV-0177891_32	PHROG	phrog_7445	NA	unknown function
UHGV-0177891_32	UniRef90	UniRef90_Q7Y4K2	Gp22	NA
UHGV-0177891_32	eggNOG-mapper	157924.Q7Y4K2_9CAUD	PcfK-like protein	NA
UHGV-0177891_32	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0177891_32	Structural annotation	PF14058	NA	NA
UHGV-0177891_33	PHROG	phrog_1174	NA	unknown function
UHGV-0177891_33	UniRef90	UniRef90_A0A139PKK9	Putative phage protein	NA
UHGV-0177891_33	eggNOG-mapper	768726.HMPREF9178_1079	NA	NA
UHGV-0177891_34	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177891_34	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177891_34	UniRef90	UniRef90_A0A7G1IS63	DNA replication protein	NA
UHGV-0177891_34	eggNOG-mapper	1566990.A0A0A0YSG2_9CAUD	IstB-like ATP binding protein	NA
UHGV-0177891_34	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0177891_34	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0177891_35	PHROG	phrog_2108	NA	unknown function
UHGV-0177891_35	UniRef90	UniRef90_Q7Y4K4	Gp20	NA
UHGV-0177891_36	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0177891_36	PHROG	phrog_11769	NA	unknown function
UHGV-0177891_36	UniRef90	UniRef90_A0A139PKR7	Phage replication initiation	NA
UHGV-0177891_36	eggNOG-mapper	157924.Q7Y4K5_9CAUD	calcium ion binding	NA
UHGV-0177891_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0177891_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0177891_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0177891_36	Structural annotation	PF09681, PF07261, TIGR01714, COG3935	NA	NA
UHGV-0177891_37	PHROG	phrog_7483	NA	unknown function
UHGV-0177891_37	UniRef90	UniRef90_A0A0X8UVS5	NA	NA
UHGV-0177891_38	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177891_38	UniRef90	UniRef90_A0A7T3DZE1	DNA-binding protein	NA
UHGV-0177891_38	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0177891_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177891_39	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0177891_39	UniRef90	UniRef90_A0A6I3UGI0	Bro-N domain-containing protein	NA
UHGV-0177891_39	eggNOG-mapper	1282664.H354_07545	BRO family, N-terminal domain protein	NA
UHGV-0177891_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177891_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0177891_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0177891_39	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0177891_40	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0177891_40	UniRef90	UniRef90_E6KKA4	HTH cro/C1-type domain-containing protein	NA
UHGV-0177891_40	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0177891_41	PHROG	phrog_585	NA	unknown function
UHGV-0177891_41	UniRef90	UniRef90_A0A0N7JDH4	NA	NA
UHGV-0177891_41	eggNOG-mapper	861455.HMPREF9184_01011	NA	NA
UHGV-0177891_41	Pfam	PF10711	NA	DUF2513
UHGV-0177891_41	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0177891_42	PHROG	phrog_9949	NA	unknown function
UHGV-0177891_42	AcrCatalog	cluster_10982	NA	NA
UHGV-0177891_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177891_43	UniRef90	UniRef90_A0A7G1ITM4	HTH cro/C1-type domain-containing protein	NA
UHGV-0177891_43	eggNOG-mapper	1282664.H354_07515	sequence-specific DNA binding	NA
UHGV-0177891_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177891_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177891_43	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0177891_44	PHROG	phrog_87	metallo-protease	other
UHGV-0177891_44	UniRef90	UniRef90_A0A0E9GZ75	NA	NA
UHGV-0177891_44	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0177891_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0177891_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0177891_44	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0177891_45	PHROG	phrog_4654	NA	unknown function
UHGV-0177891_45	UniRef90	UniRef90_A0A3R9N3K3	HIRAN domain-containing protein	NA
UHGV-0177891_45	eggNOG-mapper	888049.HMPREF8578_0664	HIRAN domain	NA
UHGV-0177891_45	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0177891_46	KOfam	K14059	int; integrase	NA
UHGV-0177891_46	PHROG	phrog_34557	integrase	integration and excision
UHGV-0177891_46	UniRef90	UniRef90_A0A1S5S9I3	Integrase	NA
UHGV-0177891_46	eggNOG-mapper	1297534.CAUJ01000005_gene209	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0177891_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0177891_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0177891_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0177891_46	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA