UHGV-0177905

Genome information

Genome length 42,612 bps

CDS count 77

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177905
vOTU ID	vOTU-069438
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584638
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.23
Jumbo phage	No

Genome content
Genome length	42,612 bps
GC content	38.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	89.24%
Average CDS length	496.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177905_1	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0177905_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0177905_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0177905_4	UniRef90	UniRef90_A0A1Q6KIG7	Transcriptional regulator	NA
UHGV-0177905_4	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0177905_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177905_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177905_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177905_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177905_6	PHROG	phrog_14275	NA	unknown function
UHGV-0177905_6	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0177905_6	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0177905_6	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0177905_6	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0177905_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177905_7	PHROG	phrog_95	integrase	integration and excision
UHGV-0177905_7	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0177905_7	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0177905_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177905_7	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177905_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177905_7	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0177905_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0177905_8	PHROG	phrog_435	endolysin	lysis
UHGV-0177905_8	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177905_8	eggNOG-mapper	1283341.Q24LG3_BPPCD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0177905_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0177905_8	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0177905_9	PHROG	phrog_1129	holin	lysis
UHGV-0177905_9	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0177905_9	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0177905_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0177905_9	Structural annotation	PF06946	NA	NA
UHGV-0177905_10	PHROG	phrog_4105	NA	unknown function
UHGV-0177905_10	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0177905_12	PHROG	phrog_18725	NA	unknown function
UHGV-0177905_12	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0177905_14	PHROG	phrog_13879	NA	unknown function
UHGV-0177905_14	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0177905_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0177905_15	PHROG	phrog_1194	NA	unknown function
UHGV-0177905_15	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0177905_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0177905_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177905_16	UniRef90	UniRef90_H3SAA2	Phage-like protein	NA
UHGV-0177905_16	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0177905_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0177905_17	PHROG	phrog_706	NA	unknown function
UHGV-0177905_17	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0177905_17	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0177905_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177905_17	Structural annotation	PF06854	NA	NA
UHGV-0177905_18	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0177905_18	Pfam	PF20378	NA	DUF6673
UHGV-0177905_18	Structural annotation	PF10666	NA	NA
UHGV-0177905_19	PHROG	phrog_3099	NA	unknown function
UHGV-0177905_19	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0177905_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177905_20	Structural annotation	PF12691	NA	NA
UHGV-0177905_21	PHROG	phrog_3366	NA	unknown function
UHGV-0177905_21	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0177905_21	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177905_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177905_22	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0177905_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177905_23	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0177905_23	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0177905_23	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0177905_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177905_24	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0177905_24	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0177905_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177905_26	PHROG	phrog_1233	NA	unknown function
UHGV-0177905_26	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0177905_26	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0177905_27	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0177905_28	PHROG	phrog_20016	NA	unknown function
UHGV-0177905_28	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177905_28	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0177905_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177905_29	PHROG	phrog_16490	NA	unknown function
UHGV-0177905_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0177905_30	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0177905_31	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0177905_32	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0177905_32	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0177905_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177905_33	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0177905_33	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0177905_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177905_33	COG	COG2369	NA	NA
UHGV-0177905_33	Structural annotation	PF06152	NA	NA
UHGV-0177905_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177905_34	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0177905_34	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0177905_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0177905_34	Structural annotation	PF11114	NA	NA
UHGV-0177905_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0177905_36	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0177905_36	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0177905_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0177905_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0177905_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0177905_37	UniRef90	UniRef90_A0A414LWL5	Terminase_3 domain-containing protein	NA
UHGV-0177905_37	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0177905_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0177905_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0177905_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0177905_37	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0177905_38	PHROG	phrog_33130	NA	unknown function
UHGV-0177905_38	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0177905_38	Structural annotation	PF10922	NA	NA
UHGV-0177905_41	eggNOG-mapper	1235790.C805_00098	NA	NA
UHGV-0177905_43	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0177905_47	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0177905_47	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0177905_47	UniRef90	UniRef90_A0A3R5ZUS2	DNA adenine methylase	NA
UHGV-0177905_47	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0177905_47	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0177905_47	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0177905_47	COG	COG0338	DNA-adenine methylase	NA
UHGV-0177905_47	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0177905_51	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0177905_51	Structural annotation	PF17457	NA	NA
UHGV-0177905_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0177905_53	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0177905_53	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0177905_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0177905_53	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0177905_54	PHROG	phrog_874	NA	unknown function
UHGV-0177905_54	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0177905_54	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0177905_54	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0177905_55	PHROG	phrog_20593	NA	unknown function
UHGV-0177905_56	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0177905_56	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0177905_56	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0177905_56	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0177905_56	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0177905_56	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0177905_57	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0177905_58	PHROG	phrog_8684	NA	unknown function
UHGV-0177905_58	UniRef90	UniRef90_A0A412FGY3	YopX domain-containing protein	NA
UHGV-0177905_58	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0177905_58	Pfam	PF09643	YopX protein	YopX
UHGV-0177905_58	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0177905_62	PHROG	phrog_10455	NA	unknown function
UHGV-0177905_62	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0177905_65	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177905_65	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177905_65	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0177905_65	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0177905_65	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0177905_65	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0177905_65	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0177905_66	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177905_66	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0177905_66	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0177905_66	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0177905_67	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0177905_67	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177905_67	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0177905_67	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0177905_67	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0177905_67	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0177905_67	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0177905_69	PHROG	phrog_7566	NA	unknown function
UHGV-0177905_69	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0177905_69	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0177905_70	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177905_70	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0177905_71	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177905_71	UniRef90	UniRef90_A0A412KFC1	Single-stranded DNA-binding protein	NA
UHGV-0177905_71	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0177905_71	Pfam	PF04404	ERF superfamily	ERF
UHGV-0177905_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177905_71	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0177905_72	PHROG	phrog_674	NA	unknown function
UHGV-0177905_72	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0177905_72	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0177905_72	Pfam	PF07083	NA	DUF1351
UHGV-0177905_72	Structural annotation	PF07083	NA	NA
UHGV-0177905_74	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0177905_76	Structural annotation	PF11127	NA	NA