UHGV-0177913

Genome information

Genome length 31,956 bps

CDS count 50

Completeness 85.09% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177913
vOTU ID	vOTU-028992
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588522
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.46
Jumbo phage	No

Genome content
Genome length	31,956 bps
GC content	39.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.57%
Average CDS length	602.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177913_1	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0177913_1	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0177913_1	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0177913_1	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0177913_1	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0177913_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0177913_2	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0177913_2	UniRef90	UniRef90_A0A2P1CCG3	Adenine-specific methyltransferase	NA
UHGV-0177913_2	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0177913_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0177913_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0177913_2	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0177913_3	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0177913_3	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0177913_3	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0177913_3	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0177913_3	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0177913_4	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0177913_4	PHROG	phrog_9677	NA	unknown function
UHGV-0177913_4	UniRef90	UniRef90_UPI001F478CC1	UDP-galactopyranose mutase	NA
UHGV-0177913_4	eggNOG-mapper	1410618.JNKI01000005_gene2298	UDP-galactopyranose mutase	NA
UHGV-0177913_4	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0177913_4	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0177913_4	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0177913_4	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0177913_4	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0177913_5	PHROG	phrog_13845	NA	unknown function
UHGV-0177913_5	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0177913_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0177913_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177913_6	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0177913_6	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0177913_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0177913_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0177913_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0177913_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0177913_7	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0177913_7	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-0177913_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0177913_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0177913_7	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0177913_8	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0177913_8	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0177913_8	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0177913_8	eggNOG-mapper	536232.CLM_2932	Belongs to the peptidase S14 family	NA
UHGV-0177913_8	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0177913_8	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0177913_8	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0177913_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0177913_9	UniRef90	UniRef90_A0A4V1YJV8	Phage major capsid protein	NA
UHGV-0177913_9	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0177913_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0177913_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0177913_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0177913_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0177913_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0177913_10	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0177913_10	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0177913_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0177913_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0177913_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-0177913_11	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0177913_11	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0177913_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0177913_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0177913_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0177913_12	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0177913_12	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0177913_12	Structural annotation	TIGR01725	NA	NA
UHGV-0177913_13	PHROG	phrog_78	tail terminator	connector
UHGV-0177913_13	UniRef90	UniRef90_UPI001C54EC97	NA	NA
UHGV-0177913_13	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0177913_13	Structural annotation	PF05657	NA	NA
UHGV-0177913_14	PHROG	phrog_88	major tail protein	tail
UHGV-0177913_14	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0177913_14	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0177913_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0177913_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0177913_15	PHROG	phrog_2115	tail protein	tail
UHGV-0177913_15	eggNOG-mapper	508419.F8J169_9CAUD	NA	NA
UHGV-0177913_15	Structural annotation	PF11836	NA	NA
UHGV-0177913_17	KOfam	K04559	HIP1; huntingtin interacting protein 1	NA
UHGV-0177913_17	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0177913_17	UniRef90	UniRef90_A0A3D0XPC9	TMP_3 domain-containing protein (Fragment)	NA
UHGV-0177913_17	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0177913_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0177913_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0177913_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0177913_18	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0177913_18	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0177913_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0177913_18	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0177913_19	PHROG	phrog_1084	NA	unknown function
UHGV-0177913_19	eggNOG-mapper	508419.F8J172_9CAUD	NA	NA
UHGV-0177913_19	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0177913_20	Structural annotation	PF19079	NA	NA
UHGV-0177913_21	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0177913_21	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0177913_24	Structural annotation	NF033677	NA	NA
UHGV-0177913_25	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0177913_27	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0177913_27	Structural annotation	NF040910	NA	NA
UHGV-0177913_28	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0177913_28	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0177913_28	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0177913_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177913_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0177913_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177913_29	PHROG	phrog_372	tail protein	tail
UHGV-0177913_29	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-0177913_29	eggNOG-mapper	764299.STRIC_2437	NA	NA
UHGV-0177913_29	Pfam	PF05895	NA	DUF859
UHGV-0177913_29	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0177913_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177913_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0177913_31	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0177913_31	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0177913_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177913_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0177913_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177913_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177913_31	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0177913_32	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0177913_32	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0177913_32	UniRef90	UniRef90_R6AML4	XRE family transcriptional regulator	NA
UHGV-0177913_32	eggNOG-mapper	224719.Abm4_1037	IrrE N-terminal-like domain	NA
UHGV-0177913_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177913_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177913_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0177913_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0177913_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0177913_33	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0177913_33	UniRef90	UniRef90_UPI00195F9AA7	helix-turn-helix transcriptional regulator	NA
UHGV-0177913_33	eggNOG-mapper	1121422.AUMW01000018_gene1866	Helix-turn-helix XRE-family like proteins	NA
UHGV-0177913_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177913_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0177913_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0177913_33	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177913_35	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0177913_35	UniRef90	UniRef90_A0A366DNY1	ERF superfamily protein	NA
UHGV-0177913_35	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0177913_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0177913_35	Structural annotation	PF04404	NA	NA
UHGV-0177913_36	Structural annotation	PF19157	NA	NA
UHGV-0177913_37	PHROG	phrog_6244	NA	unknown function
UHGV-0177913_37	UniRef90	UniRef90_A0A7W3SYY9	Putative phage-related endonuclease	NA
UHGV-0177913_37	eggNOG-mapper	1308866.J416_09399	YqaJ viral recombinase family	NA
UHGV-0177913_37	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0177913_37	Structural annotation	PF05565	NA	NA
UHGV-0177913_38	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177913_38	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0177913_38	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0177913_38	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0177913_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177913_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177913_40	UniRef90	UniRef90_A0A1U7NMX8	Single-stranded DNA-binding protein	NA
UHGV-0177913_40	eggNOG-mapper	1235796.C815_00133	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0177913_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177913_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177913_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177913_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177913_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0177913_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177913_41	eggNOG-mapper	626523.GCWU000342_01037	NA	NA
UHGV-0177913_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177913_43	PHROG	phrog_7566	NA	unknown function
UHGV-0177913_43	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0177913_44	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0177913_44	UniRef90	UniRef90_A0A7X9CKX4	NA	NA
UHGV-0177913_44	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-0177913_44	Pfam	PF06356	NA	DUF1064
UHGV-0177913_44	Structural annotation	PF06356	NA	NA
UHGV-0177913_45	PHROG	phrog_4973	NA	unknown function
UHGV-0177913_45	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0177913_45	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0177913_45	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0177913_46	PHROG	phrog_15768	NA	unknown function
UHGV-0177913_46	UniRef90	UniRef90_UPI0011C34505	conserved phage C-terminal domain-containing protein	NA
UHGV-0177913_46	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0177913_46	AcrCatalog	cluster_50619	NA	NA
UHGV-0177913_46	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0177913_47	eggNOG-mapper	1301100.HG529292_gene5157	NA	NA
UHGV-0177913_48	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0177913_48	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0177913_48	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0177913_48	eggNOG-mapper	1392493.JIAB01000001_gene1377	IstB-like ATP binding protein	NA
UHGV-0177913_48	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0177913_48	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0177913_48	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0177913_48	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0177913_49	PHROG	phrog_25027	NA	unknown function
UHGV-0177913_49	UniRef90	UniRef90_A0A1G6FFG0	ArdcN domain-containing protein	NA
UHGV-0177913_49	eggNOG-mapper	1280679.ATVX01000009_gene1728	NA	NA
UHGV-0177913_49	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0177913_50	eggNOG-mapper	537011.PREVCOP_06602	NA	NA