UHGV-0177969

Genome information

vOTU vOTU-019766

Genome length 30,479 bps

CDS count 50

Completeness 89.20% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177969
vOTU ID	vOTU-019766
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580474
BioSample	SAMN09781779
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.39
Jumbo phage	No

Genome content
Genome length	30,479 bps
GC content	57.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.90%
Average CDS length	566.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177969_5	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0177969_6	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0177969_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0177969_6	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0177969_7	PHROG	phrog_37789	NA	unknown function
UHGV-0177969_14	Structural annotation	NF033787	NA	NA
UHGV-0177969_15	eggNOG-mapper	246199.CUS_4720	double-strand break repair protein	NA
UHGV-0177969_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0177969_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0177969_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0177969_16	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0177969_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0177969_18	PHROG	phrog_7566	NA	unknown function
UHGV-0177969_18	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0177969_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177969_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177969_19	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0177969_19	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0177969_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177969_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177969_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177969_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177969_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0177969_20	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0177969_20	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0177969_20	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0177969_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0177969_20	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0177969_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0177969_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0177969_21	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0177969_21	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0177969_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0177969_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0177969_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0177969_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0177969_24	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0177969_24	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-0177969_24	eggNOG-mapper	1235798.C817_05514	NA	NA
UHGV-0177969_24	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0177969_24	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0177969_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0177969_25	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0177969_25	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0177969_25	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0177969_25	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0177969_26	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177969_26	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0177969_26	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0177969_27	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0177969_27	Structural annotation	PF19962	NA	NA
UHGV-0177969_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0177969_28	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0177969_28	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0177969_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0177969_28	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0177969_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0177969_29	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0177969_29	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177969_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177969_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177969_30	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0177969_30	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0177969_30	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0177969_30	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0177969_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177969_32	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0177969_32	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0177969_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177969_32	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0177969_33	PHROG	phrog_267	major head protein	head and packaging
UHGV-0177969_33	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0177969_33	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0177969_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177969_34	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0177969_34	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0177969_34	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0177969_34	Structural annotation	PF09355	NA	NA
UHGV-0177969_35	PHROG	phrog_501	head closure Hc1	connector
UHGV-0177969_35	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0177969_35	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0177969_35	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0177969_36	PHROG	phrog_387	neck protein	connector
UHGV-0177969_36	eggNOG-mapper	1321784.HMPREF1987_01077	NA	NA
UHGV-0177969_37	PHROG	phrog_123	tail terminator	connector
UHGV-0177969_37	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0177969_37	Structural annotation	PF06141	NA	NA
UHGV-0177969_38	PHROG	phrog_117	major tail protein	tail
UHGV-0177969_38	UniRef90	UniRef90_A0A3E2U249	Phage tail protein	NA
UHGV-0177969_38	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0177969_38	COG	COG5492	NA	NA
UHGV-0177969_38	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0177969_39	PHROG	phrog_1526	NA	unknown function
UHGV-0177969_39	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0177969_40	PHROG	phrog_1633	NA	unknown function
UHGV-0177969_41	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0177969_41	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0177969_41	COG	COG1511	NA	NA
UHGV-0177969_42	PHROG	phrog_3558	tail protein	tail
UHGV-0177969_42	UniRef90	UniRef90_A0A3E2U3C8	Prophage_tail domain-containing protein	NA
UHGV-0177969_42	eggNOG-mapper	471855.Shel_15440	Phage minor structural protein, N-terminal	NA
UHGV-0177969_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0177969_42	COG	COG4926	Phage-related protein	NA
UHGV-0177969_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0177969_44	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0177969_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0177969_45	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0177969_45	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0177969_45	UniRef90	UniRef90_A0A3D9KZI6	Putative secreted protein (Por secretion system target)	NA
UHGV-0177969_45	eggNOG-mapper	1349822.NSB1T_05035	lipolytic protein G-D-S-L family	NA
UHGV-0177969_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177969_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0177969_46	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0177969_46	PHROG	phrog_894	endolysin	lysis
UHGV-0177969_46	UniRef90	UniRef90_A0A3C0D0L9	Peptidase M15	NA
UHGV-0177969_46	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0177969_46	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0177969_46	COG	COG3108	NA	NA
UHGV-0177969_46	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0177969_47	PHROG	phrog_1863	NA	unknown function
UHGV-0177969_47	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0177969_48	PHROG	phrog_263	holin	lysis
UHGV-0177969_48	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0177969_48	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0177969_48	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0177969_48	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0177969_48	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0177969_50	eggNOG-mapper	657322.FPR_28130	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0177969_50	COG	COG0691	tmRNA-binding protein	NA