UHGV-0177974

Genome information

Genome length 34,783 bps

CDS count 48

Completeness 77.10% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177974
vOTU ID	vOTU-028994
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580466
BioSample	SAMN09781779
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.46
Jumbo phage	No

Genome content
Genome length	34,783 bps
GC content	40.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.14%
Average CDS length	633.56 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177974_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0177974_2	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0177974_2	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0177974_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0177974_2	COG	COG2369	NA	NA
UHGV-0177974_2	Structural annotation	PF06152	NA	NA
UHGV-0177974_3	PHROG	phrog_3754	NA	unknown function
UHGV-0177974_3	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0177974_4	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0177974_4	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0177974_5	PHROG	phrog_21718	NA	unknown function
UHGV-0177974_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0177974_6	PHROG	phrog_22984	NA	unknown function
UHGV-0177974_7	PHROG	phrog_16490	NA	unknown function
UHGV-0177974_7	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0177974_8	PHROG	phrog_20016	NA	unknown function
UHGV-0177974_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0177974_8	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0177974_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0177974_9	PHROG	phrog_28802	NA	unknown function
UHGV-0177974_9	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0177974_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0177974_10	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0177974_10	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0177974_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0177974_10	Structural annotation	PF06810	NA	NA
UHGV-0177974_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-0177974_11	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0177974_11	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0177974_11	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0177974_11	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0177974_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0177974_12	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0177974_14	PHROG	phrog_774	NA	unknown function
UHGV-0177974_14	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0177974_15	PHROG	phrog_18218	NA	unknown function
UHGV-0177974_15	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0177974_15	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0177974_15	Structural annotation	PF06946	NA	NA
UHGV-0177974_16	PHROG	phrog_3366	NA	unknown function
UHGV-0177974_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0177974_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0177974_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0177974_17	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0177974_17	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0177974_17	Structural annotation	PF11114	NA	NA
UHGV-0177974_18	PHROG	phrog_3266	tail completion	connector
UHGV-0177974_18	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0177974_18	Structural annotation	PF12691	NA	NA
UHGV-0177974_19	PHROG	phrog_3099	NA	unknown function
UHGV-0177974_19	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0177974_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0177974_20	PHROG	phrog_11299	NA	unknown function
UHGV-0177974_20	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0177974_20	Structural annotation	PF10666	NA	NA
UHGV-0177974_21	PHROG	phrog_706	NA	unknown function
UHGV-0177974_21	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0177974_21	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0177974_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0177974_21	Structural annotation	PF06854	NA	NA
UHGV-0177974_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177974_22	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0177974_22	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0177974_22	COG	COG1511	NA	NA
UHGV-0177974_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0177974_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0177974_24	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0177974_24	PHROG	phrog_6616	tail protein	tail
UHGV-0177974_24	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0177974_24	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0177974_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0177974_24	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0177974_25	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0177974_25	Structural annotation	PF20986	NA	NA
UHGV-0177974_26	PHROG	phrog_9589	endolysin	lysis
UHGV-0177974_26	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0177974_26	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0177974_26	Pfam	PF05257	CHAP domain	CHAP
UHGV-0177974_26	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0177974_26	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0177974_26	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0177974_27	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0177974_27	PHROG	phrog_95	integrase	integration and excision
UHGV-0177974_27	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0177974_27	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0177974_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177974_27	Pfam	PF07508	Recombinase	Recombinase
UHGV-0177974_27	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0177974_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177974_27	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0177974_28	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0177974_28	eggNOG-mapper	180332.JTGN01000005_gene2952	domain, Protein	NA
UHGV-0177974_28	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0177974_28	COG	COG2382	Enterochelin esterase or related enzyme	NA
UHGV-0177974_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0177974_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0177974_30	UniRef90	UniRef90_A0A2V2D6D5	XRE family transcriptional regulator	NA
UHGV-0177974_30	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0177974_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0177974_30	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0177974_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0177974_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0177974_42	Structural annotation	NF011879	NA	NA
UHGV-0177974_43	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0177974_44	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177974_44	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0177974_44	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0177974_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0177974_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0177974_45	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0177974_45	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0177974_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0177974_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0177974_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0177974_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0177974_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0177974_46	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0177974_46	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0177974_46	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0177974_46	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0177974_46	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0177974_47	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0177974_47	PHROG	phrog_11992	NA	unknown function
UHGV-0177974_47	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0177974_47	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0177974_47	PADLOC	drt-cluster192	DRT	DRT
UHGV-0177974_47	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0177974_47	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0177974_47	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0177974_48	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0177974_48	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0177974_48	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0177974_48	Pfam	PF06048	NA	DUF927
UHGV-0177974_48	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0177974_48	COG	COG5519	NA	NA
UHGV-0177974_48	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA