UHGV-0177976

Genome information

Genome length 32,496 bps

CDS count 51

Completeness 56.35% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0177976
vOTU ID	vOTU-028995
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580469
BioSample	SAMN09781779
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.59
Jumbo phage	No

Genome content
Genome length	32,496 bps
GC content	49.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	87.20%
Average CDS length	557.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0177976_1	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177976_1	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-0177976_1	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0177976_4	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0177976_4	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0177976_4	COG	COG3103	NA	NA
UHGV-0177976_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0177976_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0177976_6	UniRef90	UniRef90_A0A7Z6MPP3	ANT domain-containing protein	NA
UHGV-0177976_6	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0177976_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0177976_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0177976_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0177976_6	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0177976_7	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0177976_9	Structural annotation	PF20075	NA	NA
UHGV-0177976_10	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0177976_10	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0177976_10	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0177976_10	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0177976_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0177976_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0177976_10	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0177976_11	Structural annotation	NF009949	NA	NA
UHGV-0177976_13	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0177976_14	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0177976_14	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0177976_14	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0177976_14	COG	COG5410	NA	NA
UHGV-0177976_14	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0177976_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0177976_16	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0177976_16	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0177976_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0177976_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0177976_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0177976_19	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0177976_19	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0177976_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0177976_19	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0177976_20	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0177976_20	Structural annotation	TIGR01560	NA	NA
UHGV-0177976_21	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0177976_22	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0177976_23	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0177976_24	PHROG	phrog_158	major tail protein	tail
UHGV-0177976_24	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0177976_24	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0177976_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0177976_25	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0177976_25	Pfam	PF16478	NA	DUF5055
UHGV-0177976_25	Structural annotation	PF16478	NA	NA
UHGV-0177976_26	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0177976_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0177976_27	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0177976_27	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0177976_28	PHROG	phrog_1194	NA	unknown function
UHGV-0177976_28	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0177976_28	Pfam	PF20458	NA	DUF6711
UHGV-0177976_28	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0177976_29	PHROG	phrog_6616	tail protein	tail
UHGV-0177976_29	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0177976_29	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0177976_32	UniRef90	UniRef90_A0A3D4VZ42	Endolysin (Fragment)	NA
UHGV-0177976_32	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-0177976_32	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0177976_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0177976_33	PHROG	phrog_291	endolysin	lysis
UHGV-0177976_33	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0177976_33	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0177976_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0177976_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0177976_33	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0177976_35	PHROG	phrog_15303	NA	unknown function
UHGV-0177976_39	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0177976_40	PHROG	phrog_16490	NA	unknown function
UHGV-0177976_40	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0177976_41	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0177976_41	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0177976_41	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0177976_42	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0177976_43	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0177976_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0177976_46	UniRef90	UniRef90_UPI00189966DA	phage antirepressor KilAC domain-containing protein	NA
UHGV-0177976_46	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0177976_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0177976_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0177976_46	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0177976_47	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0177976_47	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0177976_47	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0177976_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA