UHGV-0178071

Genome information

Genome length 39,507 bps

CDS count 61

Completeness 91.53% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178071
vOTU ID	vOTU-065464
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588987
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.91
Jumbo phage	No

Genome content
Genome length	39,507 bps
GC content	42.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.89%
Average CDS length	605.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178071_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178071_3	PHROG	phrog_10250	NA	unknown function
UHGV-0178071_3	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0178071_3	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0178071_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178071_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178071_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178071_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178071_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178071_4	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0178071_4	eggNOG-mapper	86416.Clopa_2538	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178071_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178071_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178071_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178071_5	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0178071_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178071_5	Structural annotation	PF06810	NA	NA
UHGV-0178071_6	PHROG	phrog_247	major head protein	head and packaging
UHGV-0178071_6	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0178071_6	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0178071_6	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0178071_6	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0178071_8	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0178071_8	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0178071_8	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0178071_8	Structural annotation	PF20557	NA	NA
UHGV-0178071_9	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0178071_10	UniRef90	UniRef90_A0A8D9PDS5	Minor capsid protein	NA
UHGV-0178071_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178071_10	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0178071_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0178071_11	Structural annotation	PF12691	NA	NA
UHGV-0178071_12	PHROG	phrog_1407	major tail protein	tail
UHGV-0178071_12	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0178071_12	eggNOG-mapper	1423321.AS29_00690	Phage tail tube protein	NA
UHGV-0178071_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0178071_12	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0178071_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0178071_13	Structural annotation	PF11836	NA	NA
UHGV-0178071_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178071_15	UniRef90	UniRef90_A0A8D9PDW4	Minor tail protein	NA
UHGV-0178071_15	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0178071_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0178071_15	Structural annotation	PF08919	NA	NA
UHGV-0178071_16	PHROG	phrog_1194	NA	unknown function
UHGV-0178071_16	eggNOG-mapper	1280692.AUJL01000025_gene2069	NA	NA
UHGV-0178071_16	Pfam	PF20458	NA	DUF6711
UHGV-0178071_16	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0178071_17	PHROG	phrog_6616	tail protein	tail
UHGV-0178071_17	UniRef90	UniRef90_A0A7G5N1A9	Tail fiber domain-containing protein	NA
UHGV-0178071_17	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0178071_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0178071_17	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0178071_18	PHROG	phrog_372	tail protein	tail
UHGV-0178071_18	UniRef90	UniRef90_A0A3N0HXV0	Pilus assembly protein	NA
UHGV-0178071_18	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0178071_18	Pfam	PF05895	NA	DUF859
UHGV-0178071_18	COG	COG4675	Phage tail collar domain	NA
UHGV-0178071_19	PHROG	phrog_881	holin	lysis
UHGV-0178071_19	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0178071_19	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0178071_19	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0178071_19	Structural annotation	PF16938	NA	NA
UHGV-0178071_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178071_20	PHROG	phrog_435	endolysin	lysis
UHGV-0178071_20	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0178071_20	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0178071_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178071_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178071_20	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0178071_21	PHROG	phrog_1863	NA	unknown function
UHGV-0178071_21	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0178071_21	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0178071_23	UniRef90	UniRef90_A0A8D9PDZ2	Insulin receptor	NA
UHGV-0178071_24	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0178071_26	PHROG	phrog_21718	NA	unknown function
UHGV-0178071_26	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0178071_27	PHROG	phrog_22984	NA	unknown function
UHGV-0178071_28	PHROG	phrog_16490	NA	unknown function
UHGV-0178071_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0178071_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178071_31	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-0178071_31	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0178071_32	PHROG	phrog_1233	NA	unknown function
UHGV-0178071_32	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0178071_32	Structural annotation	PF13058	NA	NA
UHGV-0178071_33	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0178071_33	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0178071_33	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-0178071_33	eggNOG-mapper	5693.XP_803224.1	Transcription activator	NA
UHGV-0178071_33	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0178071_33	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0178071_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0178071_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0178071_33	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0178071_34	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0178071_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0178071_34	UniRef90	UniRef90_A0A8D9PDS0	DNA polymerase	NA
UHGV-0178071_34	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0178071_34	PADLOC	drt-cluster58	DRT	DRT
UHGV-0178071_34	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0178071_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0178071_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0178071_34	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0178071_35	UniRef90	UniRef90_A0A8D9UH23	Queuine tRNA-ribosyltransferase	NA
UHGV-0178071_35	eggNOG-mapper	996637.SGM_5178	NA	NA
UHGV-0178071_35	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0178071_36	PHROG	phrog_236	nucleotide kinase	other
UHGV-0178071_36	UniRef90	UniRef90_A0A8D9PDY1	Nucelotide kinase	NA
UHGV-0178071_36	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0178071_36	Pfam	PF11753	NA	DUF3310
UHGV-0178071_37	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0178071_37	UniRef90	UniRef90_A0A7C6S799	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0178071_37	eggNOG-mapper	1078083.HMPREF1208_00639	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0178071_37	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0178071_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0178071_37	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0178071_38	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0178071_38	PHROG	phrog_4899	NA	unknown function
UHGV-0178071_38	UniRef90	UniRef90_A0A8D9PDW2	Putative vitamin uptake transporter	NA
UHGV-0178071_38	eggNOG-mapper	1236494.BAJN01000018_gene2066	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0178071_38	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0178071_38	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0178071_38	COG	COG1738	NA	NA
UHGV-0178071_38	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0178071_38	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0178071_39	UniRef90	UniRef90_A0A8D9UHC6	QueF-like protein	NA
UHGV-0178071_39	Structural annotation	PF01227, MF_00818, TIGR03139, COG0780	NA	NA
UHGV-0178071_40	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0178071_40	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0178071_40	UniRef90	UniRef90_A0A8D9UHD0	Queuosine biosynthesis protein	NA
UHGV-0178071_40	eggNOG-mapper	1064535.MELS_0627	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0178071_40	PADLOC	QueC_00001	QueC	CBASS
UHGV-0178071_40	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0178071_40	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0178071_40	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0178071_40	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-0178071_40	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0178071_41	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-0178071_41	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0178071_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0178071_42	PHROG	phrog_18685	NA	unknown function
UHGV-0178071_42	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0178071_42	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0178071_42	PADLOC	drt-cluster192	DRT	DRT
UHGV-0178071_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0178071_42	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0178071_42	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0178071_42	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0178071_42	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0178071_43	PHROG	phrog_3724	NA	unknown function
UHGV-0178071_43	UniRef90	UniRef90_A0A3M8AMJ4	NA	NA
UHGV-0178071_43	eggNOG-mapper	1178540.BA70_16405	NA	NA
UHGV-0178071_43	Pfam	PF05037	NA	DUF669
UHGV-0178071_43	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0178071_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178071_44	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0178071_44	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0178071_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0178071_44	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178071_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0178071_45	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0178071_45	PHROG	phrog_37855	NA	unknown function
UHGV-0178071_45	UniRef90	UniRef90_R6BXI2	Spo0A_C domain-containing protein	NA
UHGV-0178071_45	eggNOG-mapper	1041504.RATSFB_0557	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0178071_45	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0178071_45	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0178071_46	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178071_46	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0178071_46	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0178071_49	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178071_49	PHROG	phrog_18750	NA	unknown function
UHGV-0178071_49	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0178071_49	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0178071_49	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0178071_59	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0178071_60	PHROG	phrog_6038	NA	unknown function