UHGV-0178171

Genome information

Genome length 28,557 bps

CDS count 44

Completeness 66.60% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178171
vOTU ID	vOTU-029002
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584415
BioSample	SAMN09781752
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.71
Jumbo phage	No

Genome content
Genome length	28,557 bps
GC content	42.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.45%
Average CDS length	624.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178171_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0178171_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178171_2	UniRef90	UniRef90_A0A7G9G6Y3	Phage tail protein	NA
UHGV-0178171_2	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0178171_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178171_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0178171_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178171_2	COG	COG4926	Phage-related protein	NA
UHGV-0178171_2	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0178171_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178171_3	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0178171_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0178171_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178171_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178171_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0178171_4	UniRef90	UniRef90_A0A3A9C035	Phage tail tape measure protein	NA
UHGV-0178171_4	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0178171_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0178171_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0178171_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0178171_7	PHROG	phrog_885	major tail protein	tail
UHGV-0178171_7	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0178171_7	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0178171_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0178171_8	Structural annotation	PF11367	NA	NA
UHGV-0178171_9	PHROG	phrog_1233	NA	unknown function
UHGV-0178171_9	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0178171_9	eggNOG-mapper	665950.HMPREF1025_01361	NA	NA
UHGV-0178171_9	Structural annotation	PF13058	NA	NA
UHGV-0178171_10	PHROG	phrog_17977	NA	unknown function
UHGV-0178171_10	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0178171_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0178171_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0178171_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-0178171_12	UniRef90	UniRef90_UPI001E4E7823	phage coat protein	NA
UHGV-0178171_12	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0178171_12	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0178171_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0178171_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178171_13	Structural annotation	PF06810	NA	NA
UHGV-0178171_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178171_14	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0178171_14	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0178171_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178171_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178171_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178171_15	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0178171_15	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0178171_15	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0178171_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178171_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0178171_15	COG	COG2369	NA	NA
UHGV-0178171_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0178171_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178171_16	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0178171_16	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178171_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178171_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178171_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178171_17	PHROG	phrog_10250	NA	unknown function
UHGV-0178171_17	UniRef90	UniRef90_UPI00059A8066	PBSX family phage terminase large subunit	NA
UHGV-0178171_17	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0178171_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178171_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0178171_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178171_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178171_17	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178171_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0178171_18	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0178171_18	UniRef90	UniRef90_UPI001C10A749	terminase small subunit	NA
UHGV-0178171_18	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0178171_18	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0178171_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0178171_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0178171_18	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0178171_20	Structural annotation	PF05225, NF040595	NA	NA
UHGV-0178171_21	PHROG	phrog_7566	NA	unknown function
UHGV-0178171_21	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0178171_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178171_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178171_24	UniRef90	UniRef90_UPI000A03C287	DNA cytosine methyltransferase	NA
UHGV-0178171_24	eggNOG-mapper	1141106.CAIB01000145_gene1289	C-5 cytosine-specific DNA methylase	NA
UHGV-0178171_24	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0178171_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178171_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178171_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178171_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0178171_26	UniRef90	UniRef90_D7GQK9	Cytosine-specific methyltransferase	NA
UHGV-0178171_26	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0178171_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0178171_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0178171_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0178171_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178171_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0178171_27	PHROG	phrog_9804	NA	unknown function
UHGV-0178171_27	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0178171_27	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0178171_27	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0178171_28	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0178171_28	UniRef90	UniRef90_A0A3R6NS16	Phage_rep_org_N domain-containing protein	NA
UHGV-0178171_28	eggNOG-mapper	1415774.U728_3774	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0178171_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0178171_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0178171_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178171_28	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0178171_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0178171_30	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0178171_30	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0178171_30	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0178171_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178171_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178171_31	UniRef90	UniRef90_A0A176U568	Single-stranded DNA-binding protein	NA
UHGV-0178171_31	eggNOG-mapper	796942.HMPREF9623_02068	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178171_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178171_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178171_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178171_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178171_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178171_32	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0178171_33	PHROG	phrog_14970	NA	unknown function
UHGV-0178171_33	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0178171_33	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0178171_33	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0178171_33	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0178171_35	UniRef90	UniRef90_UPI001319C207	endonuclease NucS	NA
UHGV-0178171_35	Pfam	PF14281	PD-(D/E)XK nuclease superfamily	PDDEXK_4
UHGV-0178171_37	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0178171_37	UniRef90	UniRef90_A0A359EUH8	Integrase (Fragment)	NA
UHGV-0178171_37	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0178171_37	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0178171_37	Structural annotation	PF05565	NA	NA
UHGV-0178171_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0178171_41	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0178171_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178171_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0178171_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0178171_41	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0178171_44	PHROG	phrog_4433	NA	unknown function
UHGV-0178171_44	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0178171_44	COG	COG5164	Transcription elongation factor SPT5	NA