UHGV-0178173

Genome information

Genome length 20,520 bps

CDS count 39

Completeness 50.89% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178173
vOTU ID	vOTU-022545
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583782
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.15
Jumbo phage	No

Genome content
Genome length	20,520 bps
GC content	55.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.76%
Average CDS length	496.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178173_3	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0178173_3	Structural annotation	PF10618	NA	NA
UHGV-0178173_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0178173_7	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0178173_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178173_9	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0178173_9	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0178173_9	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0178173_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0178173_10	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0178173_10	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0178173_10	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0178173_10	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0178173_11	PHROG	phrog_14606	NA	unknown function
UHGV-0178173_12	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0178173_12	Structural annotation	PF11650	NA	NA
UHGV-0178173_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178173_13	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0178173_13	UniRef90	UniRef90_A0A810QAS9	Phage terminase large subunit	NA
UHGV-0178173_13	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0178173_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0178173_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178173_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178173_15	UniRef90	UniRef90_A0A3E2U5Z1	Helix-turn-helix domain-containing protein	NA
UHGV-0178173_15	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0178173_17	Structural annotation	PF11967, TIGR00638, COG3585	NA	NA
UHGV-0178173_24	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178173_24	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0178173_24	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0178173_29	PHROG	phrog_38832	NA	unknown function
UHGV-0178173_29	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0178173_29	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0178173_30	PHROG	phrog_3136	NA	unknown function
UHGV-0178173_30	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0178173_30	eggNOG-mapper	198628.Dda3937_01763	ASCH	NA
UHGV-0178173_30	Pfam	PF04266	ASCH domain	ASCH
UHGV-0178173_30	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0178173_30	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0178173_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178173_33	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0178173_33	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178173_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178173_33	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0178173_35	PHROG	phrog_16304	NA	unknown function
UHGV-0178173_35	UniRef90	UniRef90_A0A3D3Y5P0	NA	NA
UHGV-0178173_35	Pfam	PF19808	NA	DUF6291
UHGV-0178173_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0178173_35	Structural annotation	PF19808	NA	NA
UHGV-0178173_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178173_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178173_36	UniRef90	UniRef90_R6LVK0	Single-stranded DNA-binding protein	NA
UHGV-0178173_36	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0178173_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178173_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178173_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178173_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178173_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178173_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178173_37	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0178173_37	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0178173_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0178173_37	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0178173_39	PHROG	phrog_27197	NA	unknown function
UHGV-0178173_39	eggNOG-mapper	1287476.HMPREF1651_07170	DNA-templated transcription, initiation	NA
UHGV-0178173_39	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178173_39	Structural annotation	NF007410	NA	NA