UHGV-0178180

Genome information

Genome length 32,079 bps

CDS count 47

Completeness 95.99% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178180
vOTU ID	vOTU-010987
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590448
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.83
Jumbo phage	No

Genome content
Genome length	32,079 bps
GC content	56.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.38%
Average CDS length	616.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178180_1	PHROG	phrog_1066	NA	unknown function
UHGV-0178180_1	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0178180_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178180_2	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0178180_2	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0178180_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178180_2	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0178180_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-0178180_3	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-0178180_3	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0178180_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178180_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0178180_4	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0178180_4	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0178180_4	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0178180_4	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0178180_4	Structural annotation	PF21814	NA	NA
UHGV-0178180_5	UniRef90	UniRef90_A0A133ZN96	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0178180_5	eggNOG-mapper	754027.HMPREF9554_00527	NA	NA
UHGV-0178180_6	PHROG	phrog_1374	NA	unknown function
UHGV-0178180_6	eggNOG-mapper	1203606.HMPREF1526_01891	NA	NA
UHGV-0178180_6	Structural annotation	TIGR04438	NA	NA
UHGV-0178180_7	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0178180_7	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0178180_7	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0178180_7	Structural annotation	PF14265	NA	NA
UHGV-0178180_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178180_8	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0178180_8	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0178180_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178180_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178180_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178180_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178180_9	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0178180_9	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0178180_9	Structural annotation	PF09355	NA	NA
UHGV-0178180_10	PHROG	phrog_501	head closure Hc1	connector
UHGV-0178180_10	UniRef90	UniRef90_A0A0R1ICY8	NA	NA
UHGV-0178180_10	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0178180_10	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0178180_11	PHROG	phrog_387	neck protein	connector
UHGV-0178180_11	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0178180_12	PHROG	phrog_123	tail terminator	connector
UHGV-0178180_12	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0178180_12	eggNOG-mapper	938278.CAJO01000051_gene783	NA	NA
UHGV-0178180_12	Structural annotation	PF06141	NA	NA
UHGV-0178180_13	PHROG	phrog_117	major tail protein	tail
UHGV-0178180_13	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-0178180_13	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0178180_13	COG	COG5492	NA	NA
UHGV-0178180_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0178180_14	PHROG	phrog_1526	NA	unknown function
UHGV-0178180_14	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0178180_15	PHROG	phrog_1633	NA	unknown function
UHGV-0178180_15	UniRef90	UniRef90_UPI001389891D	NA	NA
UHGV-0178180_15	eggNOG-mapper	1214184.ALKY01000039_gene910	NA	NA
UHGV-0178180_15	Pfam	PF17318	NA	DUF5361
UHGV-0178180_15	Structural annotation	PF17318	NA	NA
UHGV-0178180_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0178180_16	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0178180_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0178180_16	Structural annotation	PF20155, COG5281	NA	NA
UHGV-0178180_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178180_17	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0178180_17	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0178180_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0178180_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0178180_18	UniRef90	UniRef90_UPI00164A5272	phage tail protein	NA
UHGV-0178180_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0178180_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178180_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0178180_18	COG	COG4926	Phage-related protein	NA
UHGV-0178180_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0178180_19	Structural annotation	PF05382, COG3738	NA	NA
UHGV-0178180_20	Structural annotation	PF20622	NA	NA
UHGV-0178180_21	PHROG	phrog_199	holin	lysis
UHGV-0178180_21	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0178180_21	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0178180_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0178180_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0178180_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0178180_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0178180_22	Structural annotation	PF12802	NA	NA
UHGV-0178180_23	KOfam	K07273	acm; lysozyme	NA
UHGV-0178180_23	PHROG	phrog_291	endolysin	lysis
UHGV-0178180_23	UniRef90	UniRef90_UPI0006915851	peptidoglycan-binding protein	NA
UHGV-0178180_23	eggNOG-mapper	1280666.ATVS01000042_gene1121	Glycosyl hydrolases family 25	NA
UHGV-0178180_23	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178180_23	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0178180_23	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178180_23	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA
UHGV-0178180_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178180_24	UniRef90	UniRef90_E9S8Z3	AP2 domain protein	NA
UHGV-0178180_24	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0178180_24	Structural annotation	PF17375	NA	NA
UHGV-0178180_25	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-0178180_26	PHROG	phrog_38278	NA	unknown function
UHGV-0178180_26	UniRef90	UniRef90_UPI000B9A8013	helix-turn-helix domain-containing protein	NA
UHGV-0178180_26	eggNOG-mapper	1291050.JAGE01000002_gene3398	NA	NA
UHGV-0178180_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178180_26	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0178180_27	KOfam	K14059	int; integrase	NA
UHGV-0178180_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0178180_27	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-0178180_27	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0178180_27	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0178180_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178180_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178180_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0178180_28	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0178180_30	PHROG	phrog_9418	NA	unknown function
UHGV-0178180_30	eggNOG-mapper	471855.Shel_21720	NA	NA
UHGV-0178180_30	Structural annotation	PF10233	NA	NA
UHGV-0178180_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178180_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178180_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178180_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178180_39	UniRef90	UniRef90_UPI00164CA216	helix-turn-helix domain-containing protein	NA
UHGV-0178180_39	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0178180_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178180_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178180_39	Structural annotation	PF13730, NF033789, COG1846	NA	NA
UHGV-0178180_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178180_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178180_40	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-0178180_40	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0178180_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178180_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178180_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178180_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0178180_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0178180_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178180_41	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0178180_41	eggNOG-mapper	742738.HMPREF9460_04050	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0178180_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0178180_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0178180_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0178180_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0178180_42	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0178180_42	UniRef90	UniRef90_A0A2G3PTT7	Chromosome partitioning protein ParB	NA
UHGV-0178180_42	eggNOG-mapper	1292035.H476_0265	ParB-like nuclease domain	NA
UHGV-0178180_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0178180_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0178180_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178180_45	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0178180_45	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0178180_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178180_46	UniRef90	UniRef90_UPI000492AC93	NA	NA
UHGV-0178180_46	eggNOG-mapper	936572.HMPREF1148_0670	NA	NA
UHGV-0178180_46	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA