UHGV-0178183

Genome information

Genome length 41,719 bps

CDS count 71

Completeness 98.73% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178183
vOTU ID	vOTU-008966
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_570706
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.42
Jumbo phage	No

Genome content
Genome length	41,719 bps
GC content	54.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.27%
Average CDS length	534.85 bps
tRNA count	4
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178183_1	PHROG	phrog_27197	NA	unknown function
UHGV-0178183_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0178183_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178183_1	Structural annotation	NF007410	NA	NA
UHGV-0178183_3	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0178183_4	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0178183_5	Structural annotation	PF09537	NA	NA
UHGV-0178183_7	Structural annotation	PF14120	NA	NA
UHGV-0178183_9	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0178183_9	UniRef90	UniRef90_A0A1G8PW75	RecT family protein	NA
UHGV-0178183_9	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0178183_9	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0178183_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178183_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178183_10	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0178183_10	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178183_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178183_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178183_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178183_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178183_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0178183_11	PHROG	phrog_15768	NA	unknown function
UHGV-0178183_11	UniRef90	UniRef90_A0A329U2I8	NA	NA
UHGV-0178183_11	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0178183_11	Pfam	PF19808	NA	DUF6291
UHGV-0178183_12	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0178183_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178183_14	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0178183_14	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0178183_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178183_14	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0178183_15	PHROG	phrog_3136	NA	unknown function
UHGV-0178183_15	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0178183_15	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0178183_15	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0178183_15	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0178183_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178183_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0178183_16	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0178183_16	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0178183_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0178183_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0178183_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0178183_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178183_18	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0178183_20	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0178183_20	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0178183_20	Structural annotation	PF04218	NA	NA
UHGV-0178183_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178183_21	PHROG	phrog_10250	NA	unknown function
UHGV-0178183_21	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0178183_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0178183_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178183_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0178183_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178183_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178183_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178183_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0178183_22	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0178183_22	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0178183_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178183_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0178183_24	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0178183_24	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0178183_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0178183_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0178183_24	COG	COG2369	NA	NA
UHGV-0178183_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0178183_25	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178183_25	UniRef90	UniRef90_A0A174V2Z2	Predicted transcriptional regulator	NA
UHGV-0178183_25	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0178183_25	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178183_25	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0178183_27	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0178183_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0178183_27	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0178183_27	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0178183_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0178183_27	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0178183_27	COG	COG3617	Prophage antirepressor	NA
UHGV-0178183_27	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0178183_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178183_28	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0178183_28	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0178183_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0178183_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0178183_30	Structural annotation	PF06810	NA	NA
UHGV-0178183_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0178183_31	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0178183_31	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0178183_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0178183_33	PHROG	phrog_17977	NA	unknown function
UHGV-0178183_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178183_34	Structural annotation	PF13554	NA	NA
UHGV-0178183_35	PHROG	phrog_885	major tail protein	tail
UHGV-0178183_35	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0178183_35	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0178183_38	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0178183_38	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0178183_38	eggNOG-mapper	883066.HMPREF9233_00612	tape measure	NA
UHGV-0178183_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0178183_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0178183_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0178183_38	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0178183_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0178183_39	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0178183_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0178183_39	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0178183_40	PHROG	phrog_3558	tail protein	tail
UHGV-0178183_40	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0178183_40	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0178183_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0178183_40	COG	COG4926	Phage-related protein	NA
UHGV-0178183_40	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0178183_41	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0178183_41	COG	COG5492	NA	NA
UHGV-0178183_42	PHROG	phrog_2310	NA	unknown function
UHGV-0178183_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0178183_43	PHROG	phrog_291	endolysin	lysis
UHGV-0178183_43	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0178183_43	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0178183_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0178183_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0178183_43	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0178183_45	PHROG	phrog_15303	NA	unknown function
UHGV-0178183_46	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0178183_46	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0178183_46	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0178183_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178183_49	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0178183_50	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178183_50	UniRef90	UniRef90_UPI0011C96A8B	transcriptional regulator	NA
UHGV-0178183_50	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0178183_50	Pfam	PF00847	AP2 domain	AP2
UHGV-0178183_50	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0178183_51	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0178183_51	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0178183_53	PHROG	phrog_3754	NA	unknown function
UHGV-0178183_53	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0178183_54	PHROG	phrog_21718	NA	unknown function
UHGV-0178183_54	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0178183_55	PHROG	phrog_22984	NA	unknown function
UHGV-0178183_56	PHROG	phrog_16490	NA	unknown function
UHGV-0178183_56	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0178183_57	PHROG	phrog_20016	NA	unknown function
UHGV-0178183_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0178183_57	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0178183_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0178183_58	Structural annotation	PF12510	NA	NA
UHGV-0178183_60	KOfam	K14059	int; integrase	NA
UHGV-0178183_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0178183_60	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0178183_60	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0178183_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178183_60	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0178183_60	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0178183_61	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0178183_61	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0178183_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178183_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178183_61	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178183_63	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-0178183_63	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-0178183_65	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0178183_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178183_65	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0178183_65	eggNOG-mapper	1236976.JCM16418_2229	transcriptional	NA
UHGV-0178183_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0178183_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178183_65	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0178183_66	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0178183_66	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0178183_67	eggNOG-mapper	476272.RUMHYD_01925	NA	NA
UHGV-0178183_70	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0178183_70	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0178183_70	eggNOG-mapper	1027292.HMPREF9372_3403	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0178183_70	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0178183_70	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0178183_70	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0178183_70	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0178183_70	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0178183_71	PHROG	phrog_4433	NA	unknown function
UHGV-0178183_71	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0178183_71	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0178183_71	COG	COG5164	Transcription elongation factor SPT5	NA