UHGV-0178275

Genome information

Genome length 30,385 bps

CDS count 58

Completeness 76.68% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178275
vOTU ID	vOTU-029006
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591599
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.34
Jumbo phage	No

Genome content
Genome length	30,385 bps
GC content	51.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.85%
Average CDS length	501.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178275_1	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0178275_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0178275_5	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0178275_5	UniRef90	UniRef90_A0A3D5L1X9	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0178275_5	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-0178275_5	Pfam	PF05534	HicB family	HicB
UHGV-0178275_5	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0178275_5	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0178275_5	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-0178275_6	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0178275_6	UniRef90	UniRef90_A0A373LZR4	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0178275_6	eggNOG-mapper	1235803.C825_02971	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0178275_6	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0178275_6	Structural annotation	COG1724	NA	NA
UHGV-0178275_7	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0178275_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178275_8	PHROG	phrog_670	endolysin	lysis
UHGV-0178275_8	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178275_8	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-0178275_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0178275_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0178275_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0178275_9	PHROG	phrog_6918	holin	lysis
UHGV-0178275_9	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-0178275_9	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0178275_9	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0178275_9	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0178275_11	PHROG	phrog_937	hemolysin	other
UHGV-0178275_11	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0178275_12	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0178275_12	PHROG	phrog_30034	NA	unknown function
UHGV-0178275_12	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0178275_12	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0178275_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0178275_12	Structural annotation	PF14600	NA	NA
UHGV-0178275_14	PHROG	phrog_35892	NA	unknown function
UHGV-0178275_14	UniRef90	UniRef90_UPI00156FADAD	leucine-rich repeat domain-containing protein	NA
UHGV-0178275_14	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0178275_14	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0178275_14	COG	COG5492	NA	NA
UHGV-0178275_14	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0178275_16	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0178275_17	PHROG	phrog_10898	NA	unknown function
UHGV-0178275_17	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0178275_17	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0178275_17	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0178275_17	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0178275_20	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0178275_21	Structural annotation	PF07761	NA	NA
UHGV-0178275_23	PHROG	phrog_32308	NA	unknown function
UHGV-0178275_23	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0178275_23	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0178275_24	PHROG	phrog_1194	NA	unknown function
UHGV-0178275_24	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-0178275_24	Pfam	PF20458	NA	DUF6711
UHGV-0178275_24	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0178275_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0178275_25	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0178275_25	COG	COG1511	NA	NA
UHGV-0178275_25	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0178275_26	PHROG	phrog_706	NA	unknown function
UHGV-0178275_26	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0178275_26	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0178275_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0178275_26	Structural annotation	PF06854	NA	NA
UHGV-0178275_27	PHROG	phrog_11299	NA	unknown function
UHGV-0178275_27	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0178275_27	Structural annotation	PF10666	NA	NA
UHGV-0178275_28	PHROG	phrog_3099	NA	unknown function
UHGV-0178275_28	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0178275_28	Structural annotation	TIGR02126	NA	NA
UHGV-0178275_29	PHROG	phrog_3266	tail completion	connector
UHGV-0178275_29	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0178275_29	Structural annotation	PF20765	NA	NA
UHGV-0178275_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0178275_30	UniRef90	UniRef90_A0A4R1QRE8	Minor capsid protein	NA
UHGV-0178275_30	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0178275_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0178275_30	Structural annotation	PF11114	NA	NA
UHGV-0178275_31	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0178275_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0178275_32	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0178275_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-0178275_33	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0178275_33	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0178275_33	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0178275_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0178275_34	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0178275_34	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0178275_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0178275_34	Structural annotation	PF06810	NA	NA
UHGV-0178275_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0178275_35	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0178275_35	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0178275_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0178275_35	COG	COG2369	NA	NA
UHGV-0178275_35	Structural annotation	PF06152	NA	NA
UHGV-0178275_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0178275_36	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0178275_36	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0178275_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0178275_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0178275_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0178275_38	PHROG	phrog_10250	NA	unknown function
UHGV-0178275_38	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0178275_38	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0178275_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0178275_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0178275_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0178275_38	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0178275_39	UniRef90	UniRef90_A0A2Z4Q9Z4	Nascent polypeptide-associated complex domain protein	NA
UHGV-0178275_39	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0178275_39	Structural annotation	PF13542	NA	NA
UHGV-0178275_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0178275_40	UniRef90	UniRef90_A0A858BU04	NA	NA
UHGV-0178275_40	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0178275_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0178275_40	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0178275_42	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0178275_42	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-0178275_42	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0178275_42	Structural annotation	PF18909	NA	NA
UHGV-0178275_46	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0178275_46	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0178275_46	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0178275_46	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0178275_51	PHROG	phrog_5781	NA	unknown function
UHGV-0178275_51	UniRef90	UniRef90_A0A2V2GDQ1	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0178275_51	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0178275_51	Pfam	PF14359	NA	DUF4406
UHGV-0178275_51	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0178275_51	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0178275_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0178275_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178275_53	UniRef90	UniRef90_A0A3D3Y454	Adenylyl-sulfate reductase	NA
UHGV-0178275_53	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0178275_53	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0178275_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0178275_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178275_53	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0178275_55	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0178275_55	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0178275_55	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0178275_55	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0178275_58	UniRef90	UniRef90_A0A3D3Y5P0	NA	NA
UHGV-0178275_58	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA