UHGV-0178288

Genome information

Genome length 33,120 bps

CDS count 54

Completeness 99.73% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0178288
vOTU ID	vOTU-010989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583738
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.31
Jumbo phage	No

Genome content
Genome length	33,120 bps
GC content	59.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.41%
Average CDS length	588.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0178288_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0178288_2	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0178288_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0178288_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0178288_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0178288_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0178288_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0178288_2	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0178288_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0178288_3	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0178288_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0178288_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0178288_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0178288_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0178288_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0178288_4	KOfam	K06904	NA	NA
UHGV-0178288_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0178288_4	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0178288_4	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0178288_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0178288_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0178288_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0178288_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0178288_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0178288_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178288_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0178288_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0178288_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0178288_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0178288_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0178288_6	PHROG	phrog_2550	NA	unknown function
UHGV-0178288_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0178288_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0178288_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0178288_7	PHROG	phrog_19734	NA	unknown function
UHGV-0178288_7	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0178288_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0178288_8	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0178288_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0178288_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0178288_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0178288_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0178288_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0178288_9	Structural annotation	TIGR01725	NA	NA
UHGV-0178288_10	PHROG	phrog_17658	NA	unknown function
UHGV-0178288_10	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-0178288_10	Structural annotation	PF18116	NA	NA
UHGV-0178288_11	PHROG	phrog_88	major tail protein	tail
UHGV-0178288_11	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0178288_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0178288_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0178288_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0178288_12	Structural annotation	PF11836	NA	NA
UHGV-0178288_14	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0178288_14	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0178288_14	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0178288_14	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0178288_14	Structural annotation	COG5280	NA	NA
UHGV-0178288_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0178288_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0178288_16	PHROG	phrog_13879	NA	unknown function
UHGV-0178288_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0178288_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0178288_17	PHROG	phrog_18725	NA	unknown function
UHGV-0178288_17	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0178288_18	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0178288_18	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0178288_19	PHROG	phrog_22773	NA	unknown function
UHGV-0178288_19	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0178288_20	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-0178288_20	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0178288_21	PHROG	phrog_1863	NA	unknown function
UHGV-0178288_21	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0178288_23	PHROG	phrog_1129	holin	lysis
UHGV-0178288_23	UniRef90	UniRef90_UPI001EDED0D7	phage holin family protein	NA
UHGV-0178288_23	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0178288_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0178288_23	Structural annotation	PF06946	NA	NA
UHGV-0178288_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0178288_24	PHROG	phrog_435	endolysin	lysis
UHGV-0178288_24	UniRef90	UniRef90_A0A329MTH0	MurNAc-LAA domain-containing protein	NA
UHGV-0178288_24	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0178288_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0178288_24	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0178288_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0178288_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0178288_24	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-0178288_25	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0178288_26	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0178288_26	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0178288_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178288_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0178288_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0178288_27	AcrCatalog	cluster_11486	NA	NA
UHGV-0178288_28	KOfam	K14059	int; integrase	NA
UHGV-0178288_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0178288_28	UniRef90	UniRef90_A0A174HFN7	Site-specific tyrosine recombinase XerC	NA
UHGV-0178288_28	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0178288_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0178288_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0178288_28	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0178288_29	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-0178288_29	eggNOG-mapper	509191.AEDB02000084_gene5185	Right handed beta helix region	NA
UHGV-0178288_29	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0178288_29	COG	COG0760	Peptidyl-prolyl isomerase, parvulin family	NA
UHGV-0178288_30	UniRef90	UniRef90_R5HIC1	Helix-turn-helix domain protein	NA
UHGV-0178288_30	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0178288_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0178288_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0178288_31	UniRef90	UniRef90_A0A1Y3ZNM0	HTH cro/C1-type domain-containing protein	NA
UHGV-0178288_31	eggNOG-mapper	237609.PSAKL28_16870	transcriptional regulator	NA
UHGV-0178288_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0178288_31	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0178288_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0178288_32	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0178288_34	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0178288_34	PHROG	phrog_4433	NA	unknown function
UHGV-0178288_34	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0178288_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0178288_34	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0178288_37	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178288_37	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0178288_37	eggNOG-mapper	1203606.HMPREF1526_01323	Helix-turn-helix domain	NA
UHGV-0178288_37	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0178288_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0178288_37	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0178288_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0178288_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0178288_38	UniRef90	UniRef90_A0A3A8Z521	DNA helicase	NA
UHGV-0178288_38	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0178288_38	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0178288_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0178288_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0178288_38	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0178288_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0178288_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0178288_39	UniRef90	UniRef90_UPI001D07FBC5	dUTP diphosphatase	NA
UHGV-0178288_39	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0178288_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0178288_39	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0178288_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0178288_39	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0178288_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178288_40	UniRef90	UniRef90_UPI001EDF1E9D	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0178288_40	eggNOG-mapper	693746.OBV_42570	NA	NA
UHGV-0178288_40	PADLOC	SspD_00001	SspD	SSP
UHGV-0178288_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178288_40	Structural annotation	PF01507, MF_00063, NF005316, COG0175	NA	NA
UHGV-0178288_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0178288_41	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0178288_41	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0178288_41	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0178288_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0178288_41	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0178288_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0178288_43	UniRef90	UniRef90_UPI001EDF1E9D	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0178288_43	eggNOG-mapper	1378168.N510_03014	NA	NA
UHGV-0178288_43	PADLOC	SspD_00001	SspD	SSP
UHGV-0178288_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0178288_43	Structural annotation	PF01507, MF_00063, NF005316, COG0175	NA	NA
UHGV-0178288_44	PHROG	phrog_38832	NA	unknown function
UHGV-0178288_44	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0178288_45	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0178288_47	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0178288_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0178288_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0178288_50	UniRef90	UniRef90_UPI001030DE80	single-stranded DNA-binding protein	NA
UHGV-0178288_50	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0178288_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0178288_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0178288_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0178288_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0178288_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0178288_51	PHROG	phrog_27610	NA	unknown function
UHGV-0178288_51	Structural annotation	PF09465, COG5475	NA	NA
UHGV-0178288_53	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0178288_53	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0178288_53	Structural annotation	PF01446	NA	NA
UHGV-0178288_54	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0178288_54	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0178288_54	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0178288_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA